STRINGSTRING
A361_00935 A361_00935 A361_07980 A361_07980 A361_08360 A361_08360 A361_10570 A361_10570 A361_13490 A361_13490 A361_21500 A361_21500 A361_24445 A361_24445 A361_24900 A361_24900 A361_24915 A361_24915
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A361_00935N-acetylmuramoyl-L-alanine amidase CwlD; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
A361_07980Transposase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
A361_08360N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
A361_10570Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (235 aa)
A361_13490N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
A361_21500N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (581 aa)
A361_24445Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
A361_24900N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (497 aa)
A361_24915Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (569 aa)
Your Current Organism:
Bacillus oceanisediminis
NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691
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