(3 nodes) Tartrate dehydrogenase network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_03035	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
	A361_14555	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
	A361_25080	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A361_03035	A361_14555	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
A361_03035	A361_25080	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
A361_14555	A361_03035	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
A361_14555	A361_25080	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
A361_25080	A361_03035	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
A361_25080	A361_14555	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902