(22 nodes) Ribonuclease H superfamily network (Bacillus oceanisediminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A361_01115	Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	A361_01085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (722 aa)
	A361_25670	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	rnhA	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	A361_19005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	A361_14775	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	A361_19175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (419 aa)
	dinG	ATP-dependent DNA helicase DinG; 3'-5' exonuclease. (933 aa)
	A361_19965	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	A361_20520	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (646 aa)
	A361_20965	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	rnhC	Ribonuclease HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (312 aa)
	polA	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. (877 aa)
	A361_23520	Inhibitor of the KinA pathway of sporulation; Derived by automated computational analysis using gene prediction method: Protein Homology. (206 aa)
	A361_24740	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	A361_12805	Exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	A361_11825	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	polC	PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (1441 aa)
	rnhB	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (259 aa)
	A361_08065	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa)
	A361_05020	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	A361_03080	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)

Your Current Organism:

Bacillus oceanisediminis

NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A361_05020	A361_08065	A361_05020	A361_08065	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
A361_05020	A361_25670	A361_05020	A361_25670	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
A361_05020	polA	A361_05020	A361_22145	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.603
A361_05020	polC	A361_05020	A361_09895	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.908
A361_08065	A361_05020	A361_08065	A361_05020	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
A361_08065	A361_25670	A361_08065	A361_25670	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
A361_08065	polA	A361_08065	A361_22145	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.487
A361_08065	polC	A361_08065	A361_09895	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.904
A361_19005	polA	A361_19005	A361_22145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.558
A361_19005	rnhA	A361_19005	A361_19015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.955
A361_19005	rnhB	A361_19005	A361_09615	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.706
A361_25670	A361_05020	A361_25670	A361_05020	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
A361_25670	A361_08065	A361_25670	A361_08065	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
A361_25670	polA	A361_25670	A361_22145	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.487
A361_25670	polC	A361_25670	A361_09895	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	PolC-type DNA polymerase III; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.	0.905
dinG	polA	A361_19300	A361_22145	ATP-dependent DNA helicase DinG; 3'-5' exonuclease.	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	0.878
dinG	rnhB	A361_19300	A361_09615	ATP-dependent DNA helicase DinG; 3'-5' exonuclease.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.638
polA	A361_05020	A361_22145	A361_05020	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.603
polA	A361_08065	A361_22145	A361_08065	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	DNA polymerase III subunit epsilon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
polA	A361_19005	A361_22145	A361_19005	DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558