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A361_03035 A361_03035 A361_04095 A361_04095 A361_04870 A361_04870 A361_05320 A361_05320 A361_07085 A361_07085 A361_07175 A361_07175 A361_10110 A361_10110 A361_10115 A361_10115 A361_11660 A361_11660 A361_12055 A361_12055 A361_12065 A361_12065 A361_13590 A361_13590 A361_13795 A361_13795 A361_13900 A361_13900 A361_14280 A361_14280 A361_14325 A361_14325 A361_14555 A361_14555 A361_14565 A361_14565 A361_14575 A361_14575 A361_14580 A361_14580 A361_14585 A361_14585 A361_14590 A361_14590 A361_16215 A361_16215 A361_18685 A361_18685 A361_18695 A361_18695 A361_18700 A361_18700 A361_19905 A361_19905 A361_19910 A361_19910 A361_19915 A361_19915 A361_19920 A361_19920 buk buk A361_20125 A361_20125 A361_21875 A361_21875 A361_21880 A361_21880 sdhB sdhB sdhA sdhA A361_21945 A361_21945 A361_22170 A361_22170 A361_22680 A361_22680 A361_23640 A361_23640 A361_23965 A361_23965 A361_25080 A361_25080 A361_25105 A361_25105 A361_25115 A361_25115 A361_25120 A361_25120 A361_25140 A361_25140 A361_25275 A361_25275 A361_26145 A361_26145 A361_26155 A361_26155 A361_26160 A361_26160
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
A361_03035Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
A361_040954-aminobutyrate--2-oxoglutarate transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (455 aa)
A361_04870acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
A361_05320RNA polymerase subunit sigma-54; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (439 aa)
A361_07085enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
A361_07175acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (392 aa)
A361_101102-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
A361_101152-oxoacid ferredoxin oxidoreductase; Catalyzes the coenzyme A dependent formation of succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
A361_11660enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)
A361_12055enoyl-CoA hydratase; Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (259 aa)
A361_120653-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
A361_13590hydroxymethylglutaryl-CoA lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
A361_13795Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (509 aa)
A361_13900Thioesterase; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
A361_14280Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family. (573 aa)
A361_14325acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (363 aa)
A361_14555Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (359 aa)
A361_14565acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (397 aa)
A361_14575enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
A361_14580succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
A361_14585succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
A361_145903-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
A361_16215Butanediol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
A361_186854-aminobutyrate--2-oxoglutarate transaminase; Catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (445 aa)
A361_18695Acyl CoA:acetate/3-ketoacid CoA transferase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
A361_18700Acyl CoA:acetate/3-ketoacid CoA transferase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
A361_19905succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
A361_19910succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
A361_19915acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
A361_19920hydroxymethylglutaryl-CoA lyase; Catalyzes the formation of acetoacetate and acetyl-CoA from 3-hydroxy-3-methylglutaryl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
bukButyrate kinase; Catalyzes the phosphorylation of 2-butanoate to butanoyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the acetokinase family. (369 aa)
A361_20125Catalyzes the synthesis of butanoylphosphate from butanoyl-CoA and inorganic phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
A361_21875Acetolactate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
A361_21880Acetolactate synthase 2 catalytic subunit; Catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
sdhBPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
sdhAPart of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; Derived by automated computational analysis using gene prediction method: Protein Homology. (586 aa)
A361_21945Succinate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
A361_22170enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
A361_22680Catalyzes the formation of acetoacetate from 3-hydroxybutyrate; Derived by automated computational analysis using gene prediction method: Protein Homology. (258 aa)
A361_23640Hydroxyalkanoic acid synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
A361_239653-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (793 aa)
A361_25080Tartrate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
A361_25105acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (396 aa)
A361_25115enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
A361_251203-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
A361_25140succinyl-CoA--3-ketoacid-CoA transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
A361_252753-hydroxybutyryl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
A361_26145acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
A361_261553-hydroxybutyryl-CoA dehydrogenase; Converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)
A361_26160acetyl-CoA acetyltransferase; Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the thiolase-like superfamily. Thiolase family. (395 aa)
Your Current Organism:
Bacillus oceanisediminis
NCBI taxonomy Id: 1196031
Other names: B. oceanisediminis 2691, Bacillus oceanisediminis 2691
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