(36 nodes) Phenylalanine, tyrosine and tryptophan biosynthesis network (Nocardia jiangxiensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000308615_07576	Unannotated protein. (274 aa)
	GCA_000308615_07577	Unannotated protein. (418 aa)
	GCA_000308615_07579	Unannotated protein. (263 aa)
	GCA_000308615_07701	Unannotated protein. (375 aa)
	GCA_000308615_07835	Unannotated protein. (224 aa)
	GCA_000308615_08529	Unannotated protein. (97 aa)
	GCA_000308615_08713	Unannotated protein. (304 aa)
	GCA_000308615_00525	Unannotated protein. (290 aa)
	GCA_000308615_01091	Unannotated protein. (363 aa)
	GCA_000308615_01210	Unannotated protein. (243 aa)
	GCA_000308615_01921	Unannotated protein. (225 aa)
	GCA_000308615_02423	Unannotated protein. (319 aa)
	GCA_000308615_02996	Unannotated protein. (143 aa)
	GCA_000308615_03004	Unannotated protein. (395 aa)
	GCA_000308615_03352	Unannotated protein. (375 aa)
	GCA_000308615_04249	Unannotated protein. (448 aa)
	GCA_000308615_04491	Unannotated protein. (341 aa)
	GCA_000308615_04492	Unannotated protein. (362 aa)
	GCA_000308615_04740	Unannotated protein. (186 aa)
	GCA_000308615_05591	Unannotated protein. (405 aa)
	GCA_000308615_05592	Unannotated protein. (429 aa)
	GCA_000308615_05593	Unannotated protein. (372 aa)
	GCA_000308615_05595	Unannotated protein. (277 aa)
	GCA_000308615_05680	Unannotated protein. (417 aa)
	GCA_000308615_05852	Unannotated protein. (257 aa)
	GCA_000308615_06676	Unannotated protein. (232 aa)
	GCA_000308615_07443	Unannotated protein. (351 aa)
	GCA_000308615_07462	Unannotated protein. (461 aa)
	GCA_000308615_07563	Unannotated protein. (377 aa)
	GCA_000308615_07567	Unannotated protein. (243 aa)
	GCA_000308615_07574	Unannotated protein. (523 aa)
	GCA_000308615_08750	Unannotated protein. (222 aa)
	GCA_000308615_09149	Unannotated protein. (364 aa)
	GCA_000308615_09500	Unannotated protein. (359 aa)
	GCA_000308615_09571	Unannotated protein. (205 aa)
	GCA_000308615_09624	Unannotated protein. (291 aa)

Your Current Organism:

Nocardia jiangxiensis

NCBI taxonomy Id: 1206731
Other names: N. jiangxiensis NBRC 101359, Nocardia jiangxiensis NBRC 101359

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000308615_00525	GCA_000308615_01091	Unannotated protein.	Unannotated protein.	0.537
GCA_000308615_00525	GCA_000308615_01921	Unannotated protein.	Unannotated protein.	0.430
GCA_000308615_00525	GCA_000308615_02996	Unannotated protein.	Unannotated protein.	0.824
GCA_000308615_00525	GCA_000308615_03004	Unannotated protein.	Unannotated protein.	0.581
GCA_000308615_00525	GCA_000308615_03352	Unannotated protein.	Unannotated protein.	0.413
GCA_000308615_00525	GCA_000308615_04249	Unannotated protein.	Unannotated protein.	0.912
GCA_000308615_00525	GCA_000308615_04492	Unannotated protein.	Unannotated protein.	0.646
GCA_000308615_00525	GCA_000308615_04740	Unannotated protein.	Unannotated protein.	0.824
GCA_000308615_00525	GCA_000308615_05591	Unannotated protein.	Unannotated protein.	0.937
GCA_000308615_00525	GCA_000308615_05592	Unannotated protein.	Unannotated protein.	0.936
GCA_000308615_00525	GCA_000308615_05593	Unannotated protein.	Unannotated protein.	0.936
GCA_000308615_00525	GCA_000308615_05595	Unannotated protein.	Unannotated protein.	0.887
GCA_000308615_00525	GCA_000308615_07443	Unannotated protein.	Unannotated protein.	0.413
GCA_000308615_00525	GCA_000308615_07462	Unannotated protein.	Unannotated protein.	0.430
GCA_000308615_00525	GCA_000308615_07563	Unannotated protein.	Unannotated protein.	0.526
GCA_000308615_00525	GCA_000308615_07574	Unannotated protein.	Unannotated protein.	0.787
GCA_000308615_00525	GCA_000308615_07576	Unannotated protein.	Unannotated protein.	0.635
GCA_000308615_00525	GCA_000308615_07701	Unannotated protein.	Unannotated protein.	0.471
GCA_000308615_00525	GCA_000308615_08529	Unannotated protein.	Unannotated protein.	0.600
GCA_000308615_00525	GCA_000308615_09149	Unannotated protein.	Unannotated protein.	0.646