STRINGSTRING
D104_17400 D104_17400 pepN pepN D104_17475 D104_17475 pepA pepA D104_12325 D104_12325 D104_12610 D104_12610 D104_13045 D104_13045 D104_13070 D104_13070 D104_13330 D104_13330 D104_14115 D104_14115 D104_14430 D104_14430 D104_14440 D104_14440 D104_14445 D104_14445 D104_16250 D104_16250 btuE btuE D104_03570 D104_03570 zwf zwf D104_04470 D104_04470 sspA sspA D104_04640 D104_04640 D104_04650 D104_04650 D104_04990 D104_04990 D104_05410 D104_05410 D104_05680 D104_05680 gshB gshB gshA gshA D104_07685 D104_07685 D104_08235 D104_08235 D104_08560 D104_08560 D104_08690 D104_08690 D104_08775 D104_08775 D104_08780 D104_08780 D104_08785 D104_08785 D104_09195 D104_09195 D104_09250 D104_09250 D104_09715 D104_09715 D104_10190 D104_10190 D104_16485 D104_16485 D104_11400 D104_11400 D104_11515 D104_11515 D104_11665 D104_11665 D104_11805 D104_11805 D104_12310 D104_12310
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
D104_17400Ornithine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (388 aa)
pepNDerived by automated computational analysis using gene prediction method: Protein Homology. (877 aa)
D104_17475Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (246 aa)
pepACytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. (487 aa)
D104_12325Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (859 aa)
D104_12610Gamma-glutamyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
D104_13045Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
D104_13070Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (174 aa)
D104_13330Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (159 aa)
D104_14115Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (608 aa)
D104_14430LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (255 aa)
D104_14440Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
D104_14445Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
D104_16250Isocitrate dehydrogenase; NADP-specific, catalyzes the formation of 2-oxoglutarate from isocitrate or oxalosuccinate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the monomeric-type IDH family. (739 aa)
btuESimilar to glutathione peroxidase; member of the btuCED operon which is required for vitamin B12 transport across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
D104_03570Carboxylate--amine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
zwfGlucose 6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone. (491 aa)
D104_04470Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
sspAStringent starvation protein A; Transcriptional activator; required for activation of bacteriophage P1 late promoter; induced by starvation; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
D104_04640Glutathione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (458 aa)
D104_04650Aminoacyl-histidine dipeptidase; Catalyzes the hydrolysis of Xaa-His dipeptides; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
D104_049906-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. (507 aa)
D104_05410Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
D104_05680Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
gshBCatalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic GSH synthase family. (315 aa)
gshAGlutamate--cysteine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily. (530 aa)
D104_07685Glutaredoxin; Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins. (84 aa)
D104_08235Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0301 (AlgH) family. (190 aa)
D104_08560Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (205 aa)
D104_08690Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
D104_08775Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (250 aa)
D104_08780Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
D104_08785Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
D104_09195Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa)
D104_09250Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)
D104_09715Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
D104_10190Gst; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GST superfamily. (202 aa)
D104_16485Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
D104_11400Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
D104_11515Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
D104_11665alpha-L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)
D104_11805Bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
D104_12310Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
Your Current Organism:
Marinomonas profundimaris
NCBI taxonomy Id: 1208321
Other names: LMG 27696, LMG:27696, M. profundimaris, MCCC 1A07573, Marinomonas profundimaris Bai et al. 2015, Marinomonas sp. D104, strain 25BN12M-4, strain D104
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