31 items (Colletotrichum orchidophilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CORC01_13980	GRF zinc finger. (439 aa)
	CORC01_13708	WD domain-containing protein. (511 aa)
	CORC01_13520	PHD-finger domain-containing protein. (485 aa)
	CORC01_12403	Histone H3; Belongs to the histone H3 family. (136 aa)
	CORC01_12324	Snf5/smarcb1/ini1. (580 aa)
	CORC01_12043	WD domain-containing protein. (438 aa)
	CORC01_11670	WD domain-containing protein. (588 aa)
	CORC01_11179	WD domain-containing protein. (476 aa)
	CORC01_10106	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CORC01_09634	Linker histone H1 and H5 family protein. (247 aa)
	CORC01_09599	Zn(2)-C6 fungal-type domain-containing protein. (762 aa)
	CORC01_09485	SPRY domain-containing protein. (568 aa)
	CORC01_08761	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. (1260 aa)
	CORC01_07718	Dpy-30 domain-containing protein. (153 aa)
	CORC01_07232	SET domain-containing protein. (1307 aa)
	CORC01_06194	Histone H2A; Belongs to the histone H2A family. (134 aa)
	CORC01_06193	Histone H2B; Belongs to the histone H2B family. (137 aa)
	CORC01_05670	Uncharacterized protein. (327 aa)
	CORC01_05619	Histone H1-binding protein. (508 aa)
	CORC01_05473	Tat pathway signal sequence. (517 aa)
	CORC01_05161	BAH domain-containing protein. (456 aa)
	CORC01_04627	Histone H2A; Belongs to the histone H2A family. (141 aa)
	CORC01_04551	Histone acetyltransferase type B catalytic subunit; Catalytic component of the histone acetylase B (HAT-B) complex. Has intrinsic substrate specificity that modifies lysine in recognition sequence GXGKXG. Involved in DNA double-strand break repair; Belongs to the HAT1 family. (480 aa)
	CORC01_04085	Histone H3-like centromeric protein cse-4. (134 aa)
	CORC01_04086	FUN14 family protein. (150 aa)
	CORC01_03905	Uncharacterized protein. (534 aa)
	CORC01_03222	Peptidase family M20/M25/M40 protein. (809 aa)
	CORC01_02723	PLU-1-like protein. (1734 aa)
	CORC01_02467	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (131 aa)
	CORC01_02368	JmjC domain-containing protein. (1757 aa)
	CORC01_00184	Uncharacterized protein. (89 aa)

Your Current Organism:

Colletotrichum orchidophilum

NCBI taxonomy Id: 1209926
Other names: C. orchidophilum, CBS 632.80, Colletotrichum orchidophilum Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012n

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CORC01_00184	CORC01_02368	A0A1G4BS85	A0A1G4BM20	Uncharacterized protein.	JmjC domain-containing protein.	0.750
CORC01_00184	CORC01_02467	A0A1G4BS85	A0A1G4BLL3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.972
CORC01_00184	CORC01_02723	A0A1G4BS85	A0A1G4BKI4	Uncharacterized protein.	PLU-1-like protein.	0.915
CORC01_00184	CORC01_03222	A0A1G4BS85	A0A1G4BJH5	Uncharacterized protein.	Peptidase family M20/M25/M40 protein.	0.841
CORC01_00184	CORC01_03905	A0A1G4BS85	A0A1G4BHE9	Uncharacterized protein.	Uncharacterized protein.	0.525
CORC01_00184	CORC01_04085	A0A1G4BS85	A0A1G4BGR0	Uncharacterized protein.	Histone H3-like centromeric protein cse-4.	0.946
CORC01_00184	CORC01_04086	A0A1G4BS85	A0A1G4BGV0	Uncharacterized protein.	FUN14 family protein.	0.811
CORC01_00184	CORC01_04627	A0A1G4BS85	A0A1G4BF32	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.967
CORC01_00184	CORC01_05161	A0A1G4BS85	A0A1G4BDX4	Uncharacterized protein.	BAH domain-containing protein.	0.571
CORC01_00184	CORC01_05473	A0A1G4BS85	A0A1G4BCZ4	Uncharacterized protein.	Tat pathway signal sequence.	0.811
CORC01_00184	CORC01_05619	A0A1G4BS85	A0A1G4BCQ0	Uncharacterized protein.	Histone H1-binding protein.	0.612
CORC01_00184	CORC01_05670	A0A1G4BS85	A0A1G4BC41	Uncharacterized protein.	Uncharacterized protein.	0.717
CORC01_00184	CORC01_06193	A0A1G4BS85	A0A1G4BB97	Uncharacterized protein.	Histone H2B; Belongs to the histone H2B family.	0.994
CORC01_00184	CORC01_07232	A0A1G4BS85	A0A1G4B7M3	Uncharacterized protein.	SET domain-containing protein.	0.847
CORC01_00184	CORC01_07718	A0A1G4BS85	A0A1G4B6I7	Uncharacterized protein.	Dpy-30 domain-containing protein.	0.848
CORC01_00184	CORC01_08761	A0A1G4BS85	A0A1G4B3A3	Uncharacterized protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.918
CORC01_00184	CORC01_09485	A0A1G4BS85	A0A1G4B1F6	Uncharacterized protein.	SPRY domain-containing protein.	0.921
CORC01_00184	CORC01_09599	A0A1G4BS85	A0A1G4B175	Uncharacterized protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.811
CORC01_00184	CORC01_09634	A0A1G4BS85	A0A1G4B108	Uncharacterized protein.	Linker histone H1 and H5 family protein.	0.878
CORC01_00184	CORC01_10106	A0A1G4BS85	A0A1G4AZH3	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.972