11 items (Colletotrichum orchidophilum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CORC01_09485	SPRY domain-containing protein. (568 aa)
	CORC01_11179	WD domain-containing protein. (476 aa)
	CORC01_11670	WD domain-containing protein. (588 aa)
	CORC01_13520	PHD-finger domain-containing protein. (485 aa)
	CORC01_01384	SET domain-containing protein. (829 aa)
	CORC01_02374	WD repeat domain-containing protein. (641 aa)
	CORC01_03222	Peptidase family M20/M25/M40 protein. (809 aa)
	CORC01_04154	WD repeat domain-containing protein. (389 aa)
	CORC01_07718	Dpy-30 domain-containing protein. (153 aa)
	CORC01_08761	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation. (1260 aa)
	CORC01_10466	Tetratricopeptide. (1587 aa)

Your Current Organism:

Colletotrichum orchidophilum

NCBI taxonomy Id: 1209926
Other names: C. orchidophilum, CBS 632.80, Colletotrichum orchidophilum Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012n

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CORC01_01384	CORC01_03222	A0A1G4BPE4	A0A1G4BJH5	SET domain-containing protein.	Peptidase family M20/M25/M40 protein.	0.624
CORC01_01384	CORC01_04154	A0A1G4BPE4	A0A1G4BGX6	SET domain-containing protein.	WD repeat domain-containing protein.	0.410
CORC01_01384	CORC01_07718	A0A1G4BPE4	A0A1G4B6I7	SET domain-containing protein.	Dpy-30 domain-containing protein.	0.441
CORC01_01384	CORC01_08761	A0A1G4BPE4	A0A1G4B3A3	SET domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.956
CORC01_01384	CORC01_09485	A0A1G4BPE4	A0A1G4B1F6	SET domain-containing protein.	SPRY domain-containing protein.	0.725
CORC01_01384	CORC01_11179	A0A1G4BPE4	A0A1G4AWM7	SET domain-containing protein.	WD domain-containing protein.	0.697
CORC01_02374	CORC01_11670	A0A1G4BLS0	A0A1G4AV94	WD repeat domain-containing protein.	WD domain-containing protein.	0.575
CORC01_03222	CORC01_01384	A0A1G4BJH5	A0A1G4BPE4	Peptidase family M20/M25/M40 protein.	SET domain-containing protein.	0.624
CORC01_03222	CORC01_04154	A0A1G4BJH5	A0A1G4BGX6	Peptidase family M20/M25/M40 protein.	WD repeat domain-containing protein.	0.934
CORC01_03222	CORC01_07718	A0A1G4BJH5	A0A1G4B6I7	Peptidase family M20/M25/M40 protein.	Dpy-30 domain-containing protein.	0.937
CORC01_03222	CORC01_09485	A0A1G4BJH5	A0A1G4B1F6	Peptidase family M20/M25/M40 protein.	SPRY domain-containing protein.	0.975
CORC01_03222	CORC01_11179	A0A1G4BJH5	A0A1G4AWM7	Peptidase family M20/M25/M40 protein.	WD domain-containing protein.	0.975
CORC01_03222	CORC01_11670	A0A1G4BJH5	A0A1G4AV94	Peptidase family M20/M25/M40 protein.	WD domain-containing protein.	0.479
CORC01_03222	CORC01_13520	A0A1G4BJH5	A0A1G4APS0	Peptidase family M20/M25/M40 protein.	PHD-finger domain-containing protein.	0.812
CORC01_04154	CORC01_01384	A0A1G4BGX6	A0A1G4BPE4	WD repeat domain-containing protein.	SET domain-containing protein.	0.410
CORC01_04154	CORC01_03222	A0A1G4BGX6	A0A1G4BJH5	WD repeat domain-containing protein.	Peptidase family M20/M25/M40 protein.	0.934
CORC01_04154	CORC01_07718	A0A1G4BGX6	A0A1G4B6I7	WD repeat domain-containing protein.	Dpy-30 domain-containing protein.	0.848
CORC01_04154	CORC01_08761	A0A1G4BGX6	A0A1G4B3A3	WD repeat domain-containing protein.	Histone-lysine N-methyltransferase, H3 lysine-4 specific; Catalytic component of the COMPASS (Set1C) complex that specifically mono-, di- and trimethylates histone H3 to form H3K4me1/2/3, which subsequently plays a role in telomere length maintenance and transcription elongation regulation.	0.973
CORC01_04154	CORC01_09485	A0A1G4BGX6	A0A1G4B1F6	WD repeat domain-containing protein.	SPRY domain-containing protein.	0.970
CORC01_04154	CORC01_11179	A0A1G4BGX6	A0A1G4AWM7	WD repeat domain-containing protein.	WD domain-containing protein.	0.966