26 items (Colletotrichum orchidophilum) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CORC01_07105	Uncharacterized protein. (226 aa)
	CORC01_00313	Uncharacterized protein. (264 aa)
	CORC01_00183	Ubiquitin family protein. (100 aa)
	CORC01_02290	Uncharacterized protein. (414 aa)
	CORC01_02467	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (131 aa)
	CORC01_03206	WD domain-containing protein; Belongs to the WD repeat SEC13 family. (426 aa)
	CORC01_03624	Chromatin remodeling complex subunit. (638 aa)
	CORC01_03565	Uncharacterized protein. (157 aa)
	CORC01_03787	CVNH domain-containing protein. (120 aa)
	CORC01_04509	MIZ/SP-RING zinc finger. (555 aa)
	CORC01_05133	Uncharacterized protein. (1568 aa)
	CORC01_05264	Uncharacterized protein. (208 aa)
	CORC01_05726	Uncharacterized protein. (401 aa)
	CORC01_06788	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	CORC01_06982	Urease. (305 aa)
	CORC01_07501	Uncharacterized protein. (189 aa)
	CORC01_08393	Uncharacterized protein. (386 aa)
	CORC01_08794	Uncharacterized protein. (282 aa)
	CORC01_08936	Nuclear pore glycoprotein p62. (763 aa)
	CORC01_10106	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	CORC01_11793	Histone deacetylase domain-containing protein. (680 aa)
	CORC01_12304	Chromatin remodelling complex subunit. (538 aa)
	CORC01_12825	Pectate lyase. (254 aa)
	CORC01_13809	RanBP1 domain-containing protein. (1173 aa)
	CORC01_14059	CFEM domain-containing protein. (110 aa)
	CORC01_14278	AT hook domain-containing protein. (673 aa)

Your Current Organism:

Colletotrichum orchidophilum

NCBI taxonomy Id: 1209926
Other names: C. orchidophilum, CBS 632.80, Colletotrichum orchidophilum Damm, P.F. Cannon & Crous, 2012, Colletotrichum sp. UD-2012n

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CORC01_00183	CORC01_00313	A0A1G4BSG2	A0A1G4BSV2	Ubiquitin family protein.	Uncharacterized protein.	0.630
CORC01_00183	CORC01_02467	A0A1G4BSG2	A0A1G4BLL3	Ubiquitin family protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.814
CORC01_00183	CORC01_03206	A0A1G4BSG2	A0A1G4BIY4	Ubiquitin family protein.	WD domain-containing protein; Belongs to the WD repeat SEC13 family.	0.762
CORC01_00183	CORC01_03624	A0A1G4BSG2	A0A1G4BIE9	Ubiquitin family protein.	Chromatin remodeling complex subunit.	0.490
CORC01_00183	CORC01_04509	A0A1G4BSG2	A0A1G4BFE8	Ubiquitin family protein.	MIZ/SP-RING zinc finger.	0.984
CORC01_00183	CORC01_05133	A0A1G4BSG2	A0A1G4BE08	Ubiquitin family protein.	Uncharacterized protein.	0.609
CORC01_00183	CORC01_05726	A0A1G4BSG2	A0A1G4BCG1	Ubiquitin family protein.	Uncharacterized protein.	0.630
CORC01_00183	CORC01_06788	A0A1G4BSG2	A0A1G4B9C5	Ubiquitin family protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.999
CORC01_00183	CORC01_08393	A0A1G4BSG2	A0A1G4B4H8	Ubiquitin family protein.	Uncharacterized protein.	0.630
CORC01_00183	CORC01_08794	A0A1G4BSG2	A0A1G4B3R7	Ubiquitin family protein.	Uncharacterized protein.	0.559
CORC01_00183	CORC01_08936	A0A1G4BSG2	A0A1G4B399	Ubiquitin family protein.	Nuclear pore glycoprotein p62.	0.987
CORC01_00183	CORC01_10106	A0A1G4BSG2	A0A1G4AZH3	Ubiquitin family protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.814
CORC01_00183	CORC01_11793	A0A1G4BSG2	A0A1G4AV07	Ubiquitin family protein.	Histone deacetylase domain-containing protein.	0.730
CORC01_00183	CORC01_12304	A0A1G4BSG2	A0A1G4AT92	Ubiquitin family protein.	Chromatin remodelling complex subunit.	0.490
CORC01_00183	CORC01_12825	A0A1G4BSG2	A0A1G4AS65	Ubiquitin family protein.	Pectate lyase.	0.630
CORC01_00183	CORC01_13809	A0A1G4BSG2	A0A1G4ANZ9	Ubiquitin family protein.	RanBP1 domain-containing protein.	0.559
CORC01_00183	CORC01_14059	A0A1G4BSG2	A0A1G4AN85	Ubiquitin family protein.	CFEM domain-containing protein.	0.630
CORC01_00313	CORC01_00183	A0A1G4BSV2	A0A1G4BSG2	Uncharacterized protein.	Ubiquitin family protein.	0.630
CORC01_00313	CORC01_03206	A0A1G4BSV2	A0A1G4BIY4	Uncharacterized protein.	WD domain-containing protein; Belongs to the WD repeat SEC13 family.	0.749
CORC01_00313	CORC01_05133	A0A1G4BSV2	A0A1G4BE08	Uncharacterized protein.	Uncharacterized protein.	0.627