(24 nodes) Protein serine/threonine kinase activity, and mRNA binding network (Nocardia beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001612785_01182	Unannotated protein. (761 aa)
	GCA_001612785_01677	Unannotated protein. (341 aa)
	GCA_001612785_01950	Unannotated protein. (1193 aa)
	GCA_001612785_02175	Unannotated protein. (70 aa)
	GCA_001612785_02208	Unannotated protein. (465 aa)
	GCA_001612785_02209	Unannotated protein. (155 aa)
	GCA_001612785_02245	Unannotated protein. (650 aa)
	GCA_001612785_02471	Unannotated protein. (517 aa)
	GCA_001612785_02716	Unannotated protein. (744 aa)
	GCA_001612785_02928	Unannotated protein. (809 aa)
	GCA_001612785_03385	Unannotated protein. (344 aa)
	GCA_001612785_03912	Unannotated protein. (693 aa)
	GCA_001612785_03984	Unannotated protein. (781 aa)
	GCA_001612785_04023	Unannotated protein. (484 aa)
	GCA_001612785_04579	Unannotated protein. (556 aa)
	GCA_001612785_04601	Unannotated protein. (664 aa)
	GCA_001612785_04932	Unannotated protein. (603 aa)
	GCA_001612785_05410	Unannotated protein. (177 aa)
	GCA_001612785_05818	Unannotated protein. (543 aa)
	GCA_001612785_06267	Unannotated protein. (1288 aa)
	GCA_001612785_06310	Unannotated protein. (633 aa)
	GCA_001612785_06311	Unannotated protein. (505 aa)
	GCA_001612785_06314	Unannotated protein. (201 aa)
	GCA_001612785_06657	Unannotated protein. (161 aa)

Your Current Organism:

Nocardia beijingensis

NCBI taxonomy Id: 1210068
Other names: N. beijingensis NBRC 16342, Nocardia beijingensis NBRC 16342

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001612785_01182	GCA_001612785_01677	Unannotated protein.	Unannotated protein.	0.855
GCA_001612785_01182	GCA_001612785_02208	Unannotated protein.	Unannotated protein.	0.504
GCA_001612785_01182	GCA_001612785_02209	Unannotated protein.	Unannotated protein.	0.524
GCA_001612785_01182	GCA_001612785_02245	Unannotated protein.	Unannotated protein.	0.427
GCA_001612785_01182	GCA_001612785_03984	Unannotated protein.	Unannotated protein.	0.773
GCA_001612785_01182	GCA_001612785_05410	Unannotated protein.	Unannotated protein.	0.440
GCA_001612785_01182	GCA_001612785_06310	Unannotated protein.	Unannotated protein.	0.417
GCA_001612785_01182	GCA_001612785_06314	Unannotated protein.	Unannotated protein.	0.488
GCA_001612785_01182	GCA_001612785_06657	Unannotated protein.	Unannotated protein.	0.697
GCA_001612785_01677	GCA_001612785_01182	Unannotated protein.	Unannotated protein.	0.855
GCA_001612785_01677	GCA_001612785_01950	Unannotated protein.	Unannotated protein.	0.721
GCA_001612785_01677	GCA_001612785_02245	Unannotated protein.	Unannotated protein.	0.982
GCA_001612785_01677	GCA_001612785_02471	Unannotated protein.	Unannotated protein.	0.853
GCA_001612785_01677	GCA_001612785_02716	Unannotated protein.	Unannotated protein.	0.819
GCA_001612785_01677	GCA_001612785_02928	Unannotated protein.	Unannotated protein.	0.846
GCA_001612785_01677	GCA_001612785_03385	Unannotated protein.	Unannotated protein.	0.845
GCA_001612785_01677	GCA_001612785_03912	Unannotated protein.	Unannotated protein.	0.850
GCA_001612785_01677	GCA_001612785_03984	Unannotated protein.	Unannotated protein.	0.774
GCA_001612785_01677	GCA_001612785_04023	Unannotated protein.	Unannotated protein.	0.851
GCA_001612785_01677	GCA_001612785_04579	Unannotated protein.	Unannotated protein.	0.859