(81 nodes) Glycolysis / Gluconeogenesis network (Nocardia beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001612785_04468	Unannotated protein. (387 aa)
	GCA_001612785_00399	Unannotated protein. (545 aa)
	GCA_001612785_00415	Unannotated protein. (478 aa)
	GCA_001612785_00528	Unannotated protein. (285 aa)
	GCA_001612785_00686	Unannotated protein. (610 aa)
	GCA_001612785_00691	Unannotated protein. (481 aa)
	GCA_001612785_00812	Unannotated protein. (344 aa)
	GCA_001612785_00942	Unannotated protein. (467 aa)
	GCA_001612785_00972	Unannotated protein. (275 aa)
	GCA_001612785_00975	Unannotated protein. (319 aa)
	GCA_001612785_01016	Unannotated protein. (350 aa)
	GCA_001612785_01055	Unannotated protein. (296 aa)
	GCA_001612785_01056	Unannotated protein. (245 aa)
	GCA_001612785_01141	Unannotated protein. (297 aa)
	GCA_001612785_01176	Unannotated protein. (351 aa)
	GCA_001612785_01340	Unannotated protein. (914 aa)
	GCA_001612785_01345	Unannotated protein. (1972 aa)
	GCA_001612785_01350	Unannotated protein. (547 aa)
	GCA_001612785_01428	Unannotated protein. (349 aa)
	GCA_001612785_01564	Unannotated protein. (797 aa)
	GCA_001612785_01568	Unannotated protein. (720 aa)
	GCA_001612785_01606	Unannotated protein. (475 aa)
	GCA_001612785_01781	Unannotated protein. (488 aa)
	GCA_001612785_01962	Unannotated protein. (424 aa)
	GCA_001612785_02135	Unannotated protein. (566 aa)
	GCA_001612785_02177	Unannotated protein. (191 aa)
	GCA_001612785_02265	Unannotated protein. (336 aa)
	GCA_001612785_02381	Unannotated protein. (971 aa)
	GCA_001612785_02397	Unannotated protein. (376 aa)
	GCA_001612785_02405	Unannotated protein. (466 aa)
	GCA_001612785_02406	Unannotated protein. (471 aa)
	GCA_001612785_02746	Unannotated protein. (261 aa)
	GCA_001612785_02747	Unannotated protein. (404 aa)
	GCA_001612785_02748	Unannotated protein. (339 aa)
	GCA_001612785_02864	Unannotated protein. (666 aa)
	GCA_001612785_02865	Unannotated protein. (359 aa)
	GCA_001612785_02968	Unannotated protein. (298 aa)
	GCA_001612785_03111	Unannotated protein. (402 aa)
	GCA_001612785_03232	Unannotated protein. (370 aa)
	GCA_001612785_03233	Unannotated protein. (327 aa)
	GCA_001612785_03234	Unannotated protein. (460 aa)
	GCA_001612785_03496	Unannotated protein. (86 aa)
	GCA_001612785_03588	Unannotated protein. (286 aa)
	GCA_001612785_03700	Unannotated protein. (376 aa)
	GCA_001612785_03722	Unannotated protein. (400 aa)
	GCA_001612785_03905	Unannotated protein. (496 aa)
	GCA_001612785_03938	Unannotated protein. (483 aa)
	GCA_001612785_03939	Unannotated protein. (384 aa)
	GCA_001612785_03940	Unannotated protein. (330 aa)
	GCA_001612785_03941	Unannotated protein. (421 aa)
	GCA_001612785_04054	Unannotated protein. (252 aa)
	GCA_001612785_04431	Unannotated protein. (771 aa)
	GCA_001612785_04438	Unannotated protein. (333 aa)
	GCA_001612785_04451	Unannotated protein. (342 aa)
	GCA_001612785_04562	Unannotated protein. (505 aa)
	GCA_001612785_04563	Unannotated protein. (133 aa)
	GCA_001612785_04707	Unannotated protein. (190 aa)
	GCA_001612785_04760	Unannotated protein. (358 aa)
	GCA_001612785_04777	Unannotated protein. (159 aa)
	GCA_001612785_05423	Unannotated protein. (544 aa)
	GCA_001612785_05455	Unannotated protein. (252 aa)
	GCA_001612785_05478	Unannotated protein. (890 aa)
	GCA_001612785_05622	Unannotated protein. (299 aa)
	GCA_001612785_05625	Unannotated protein. (716 aa)
	GCA_001612785_05673	Unannotated protein. (347 aa)
	GCA_001612785_05740	Unannotated protein. (134 aa)
	GCA_001612785_05741	Unannotated protein. (258 aa)
	GCA_001612785_05844	Unannotated protein. (471 aa)
	GCA_001612785_05944	Unannotated protein. (373 aa)
	GCA_001612785_05966	Unannotated protein. (338 aa)
	GCA_001612785_05975	Unannotated protein. (487 aa)
	GCA_001612785_05982	Unannotated protein. (499 aa)
	GCA_001612785_06179	Unannotated protein. (370 aa)
	GCA_001612785_06315	Unannotated protein. (63 aa)
	GCA_001612785_06319	Unannotated protein. (482 aa)
	GCA_001612785_06322	Unannotated protein. (364 aa)
	GCA_001612785_06337	Unannotated protein. (493 aa)
	GCA_001612785_06345	Unannotated protein. (647 aa)
	GCA_001612785_06362	Unannotated protein. (70 aa)
	GCA_001612785_06673	Unannotated protein. (344 aa)
	GCA_001612785_06768	Unannotated protein. (329 aa)

Your Current Organism:

Nocardia beijingensis

NCBI taxonomy Id: 1210068
Other names: N. beijingensis NBRC 16342, Nocardia beijingensis NBRC 16342

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001612785_00399	GCA_001612785_00686	Unannotated protein.	Unannotated protein.	0.477
GCA_001612785_00399	GCA_001612785_00691	Unannotated protein.	Unannotated protein.	0.409
GCA_001612785_00399	GCA_001612785_00812	Unannotated protein.	Unannotated protein.	0.980
GCA_001612785_00399	GCA_001612785_00942	Unannotated protein.	Unannotated protein.	0.431
GCA_001612785_00399	GCA_001612785_00972	Unannotated protein.	Unannotated protein.	0.947
GCA_001612785_00399	GCA_001612785_00975	Unannotated protein.	Unannotated protein.	0.884
GCA_001612785_00399	GCA_001612785_01055	Unannotated protein.	Unannotated protein.	0.884
GCA_001612785_00399	GCA_001612785_01056	Unannotated protein.	Unannotated protein.	0.968
GCA_001612785_00399	GCA_001612785_01141	Unannotated protein.	Unannotated protein.	0.573
GCA_001612785_00399	GCA_001612785_01176	Unannotated protein.	Unannotated protein.	0.996
GCA_001612785_00399	GCA_001612785_01340	Unannotated protein.	Unannotated protein.	0.671
GCA_001612785_00399	GCA_001612785_01345	Unannotated protein.	Unannotated protein.	0.671
GCA_001612785_00399	GCA_001612785_01350	Unannotated protein.	Unannotated protein.	0.989
GCA_001612785_00399	GCA_001612785_01568	Unannotated protein.	Unannotated protein.	0.823
GCA_001612785_00399	GCA_001612785_01781	Unannotated protein.	Unannotated protein.	0.409
GCA_001612785_00399	GCA_001612785_01962	Unannotated protein.	Unannotated protein.	0.620
GCA_001612785_00399	GCA_001612785_02135	Unannotated protein.	Unannotated protein.	0.403
GCA_001612785_00399	GCA_001612785_02177	Unannotated protein.	Unannotated protein.	0.844
GCA_001612785_00399	GCA_001612785_02265	Unannotated protein.	Unannotated protein.	0.937
GCA_001612785_00399	GCA_001612785_02381	Unannotated protein.	Unannotated protein.	0.900