(61 nodes) Glycine, serine and threonine metabolism network (Nocardia beijingensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001612785_00030	Unannotated protein. (97 aa)
	GCA_001612785_00415	Unannotated protein. (478 aa)
	GCA_001612785_00432	Unannotated protein. (250 aa)
	GCA_001612785_00433	Unannotated protein. (204 aa)
	GCA_001612785_00492	Unannotated protein. (483 aa)
	GCA_001612785_00546	Unannotated protein. (396 aa)
	GCA_001612785_00660	Unannotated protein. (372 aa)
	GCA_001612785_00923	Unannotated protein. (309 aa)
	GCA_001612785_00942	Unannotated protein. (467 aa)
	GCA_001612785_01056	Unannotated protein. (245 aa)
	GCA_001612785_01129	Unannotated protein. (532 aa)
	GCA_001612785_01238	Unannotated protein. (212 aa)
	GCA_001612785_01249	Unannotated protein. (405 aa)
	GCA_001612785_01323	Unannotated protein. (454 aa)
	GCA_001612785_01366	Unannotated protein. (317 aa)
	GCA_001612785_01651	Unannotated protein. (301 aa)
	GCA_001612785_01652	Unannotated protein. (132 aa)
	GCA_001612785_01653	Unannotated protein. (425 aa)
	GCA_001612785_01654	Unannotated protein. (200 aa)
	GCA_001612785_01787	Unannotated protein. (528 aa)
	GCA_001612785_01917	Unannotated protein. (344 aa)
	GCA_001612785_01918	Unannotated protein. (421 aa)
	GCA_001612785_02113	Unannotated protein. (131 aa)
	GCA_001612785_02114	Unannotated protein. (371 aa)
	GCA_001612785_02177	Unannotated protein. (191 aa)
	GCA_001612785_02286	Unannotated protein. (366 aa)
	GCA_001612785_02835	Unannotated protein. (351 aa)
	GCA_001612785_02997	Unannotated protein. (322 aa)
	GCA_001612785_03001	Unannotated protein. (418 aa)
	GCA_001612785_03107	Unannotated protein. (450 aa)
	GCA_001612785_03189	Unannotated protein. (317 aa)
	GCA_001612785_03190	Unannotated protein. (367 aa)
	GCA_001612785_03191	Unannotated protein. (451 aa)
	GCA_001612785_03238	Unannotated protein. (149 aa)
	GCA_001612785_03656	Unannotated protein. (392 aa)
	GCA_001612785_03938	Unannotated protein. (483 aa)
	GCA_001612785_04054	Unannotated protein. (252 aa)
	GCA_001612785_04114	Unannotated protein. (407 aa)
	GCA_001612785_04707	Unannotated protein. (190 aa)
	GCA_001612785_04855	Unannotated protein. (316 aa)
	GCA_001612785_04883	Unannotated protein. (376 aa)
	GCA_001612785_04905	Unannotated protein. (122 aa)
	GCA_001612785_04937	Unannotated protein. (379 aa)
	GCA_001612785_04973	Unannotated protein. (108 aa)
	GCA_001612785_05092	Unannotated protein. (406 aa)
	GCA_001612785_05120	Unannotated protein. (434 aa)
	GCA_001612785_05689	Unannotated protein. (431 aa)
	GCA_001612785_05712	Unannotated protein. (462 aa)
	GCA_001612785_05749	Unannotated protein. (343 aa)
	GCA_001612785_05782	Unannotated protein. (451 aa)
	GCA_001612785_05837	Unannotated protein. (420 aa)
	GCA_001612785_05838	Unannotated protein. (266 aa)
	GCA_001612785_06148	Unannotated protein. (328 aa)
	GCA_001612785_06241	Unannotated protein. (503 aa)
	GCA_001612785_06444	Unannotated protein. (316 aa)
	GCA_001612785_06486	Unannotated protein. (330 aa)
	GCA_001612785_06652	Unannotated protein. (936 aa)
	GCA_001612785_06658	Unannotated protein. (132 aa)
	GCA_001612785_06729	Unannotated protein. (315 aa)
	GCA_001612785_06744	Unannotated protein. (293 aa)
	GCA_001612785_06768	Unannotated protein. (329 aa)

Your Current Organism:

Nocardia beijingensis

NCBI taxonomy Id: 1210068
Other names: N. beijingensis NBRC 16342, Nocardia beijingensis NBRC 16342

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001612785_00030	GCA_001612785_01249	Unannotated protein.	Unannotated protein.	0.666
GCA_001612785_00415	GCA_001612785_00942	Unannotated protein.	Unannotated protein.	0.715
GCA_001612785_00415	GCA_001612785_01129	Unannotated protein.	Unannotated protein.	0.433
GCA_001612785_00415	GCA_001612785_02114	Unannotated protein.	Unannotated protein.	0.520
GCA_001612785_00415	GCA_001612785_02286	Unannotated protein.	Unannotated protein.	0.828
GCA_001612785_00415	GCA_001612785_03938	Unannotated protein.	Unannotated protein.	0.725
GCA_001612785_00415	GCA_001612785_04855	Unannotated protein.	Unannotated protein.	0.545
GCA_001612785_00415	GCA_001612785_05689	Unannotated protein.	Unannotated protein.	0.775
GCA_001612785_00415	GCA_001612785_06148	Unannotated protein.	Unannotated protein.	0.433
GCA_001612785_00415	GCA_001612785_06444	Unannotated protein.	Unannotated protein.	0.433
GCA_001612785_00415	GCA_001612785_06652	Unannotated protein.	Unannotated protein.	0.900
GCA_001612785_00415	GCA_001612785_06658	Unannotated protein.	Unannotated protein.	0.851
GCA_001612785_00432	GCA_001612785_00433	Unannotated protein.	Unannotated protein.	0.857
GCA_001612785_00432	GCA_001612785_01238	Unannotated protein.	Unannotated protein.	0.797
GCA_001612785_00432	GCA_001612785_06652	Unannotated protein.	Unannotated protein.	0.676
GCA_001612785_00433	GCA_001612785_00432	Unannotated protein.	Unannotated protein.	0.857
GCA_001612785_00433	GCA_001612785_06652	Unannotated protein.	Unannotated protein.	0.676
GCA_001612785_00492	GCA_001612785_01787	Unannotated protein.	Unannotated protein.	0.752
GCA_001612785_00492	GCA_001612785_03238	Unannotated protein.	Unannotated protein.	0.415
GCA_001612785_00546	GCA_001612785_01056	Unannotated protein.	Unannotated protein.	0.407