(36 nodes) Transferase activity, transferring alkyl or aryl (other than methyl) groups network (Nocardia uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001613345_08023	Unannotated protein. (308 aa)
	GCA_001613345_00409	Unannotated protein. (315 aa)
	GCA_001613345_00696	Unannotated protein. (338 aa)
	GCA_001613345_00924	Unannotated protein. (290 aa)
	GCA_001613345_00947	Unannotated protein. (851 aa)
	GCA_001613345_01018	Unannotated protein. (268 aa)
	GCA_001613345_01054	Unannotated protein. (381 aa)
	GCA_001613345_01165	Unannotated protein. (451 aa)
	GCA_001613345_01417	Unannotated protein. (345 aa)
	GCA_001613345_01504	Unannotated protein. (413 aa)
	GCA_001613345_01507	Unannotated protein. (462 aa)
	GCA_001613345_01579	Unannotated protein. (386 aa)
	GCA_001613345_02028	Unannotated protein. (346 aa)
	GCA_001613345_02114	Unannotated protein. (364 aa)
	GCA_001613345_02689	Unannotated protein. (210 aa)
	GCA_001613345_03008	Unannotated protein. (404 aa)
	GCA_001613345_03027	Unannotated protein. (208 aa)
	GCA_001613345_03029	Unannotated protein. (159 aa)
	GCA_001613345_03775	Unannotated protein. (433 aa)
	GCA_001613345_03803	Unannotated protein. (147 aa)
	GCA_001613345_03857	Unannotated protein. (375 aa)
	GCA_001613345_04245	Unannotated protein. (266 aa)
	GCA_001613345_04621	Unannotated protein. (206 aa)
	GCA_001613345_04906	Unannotated protein. (122 aa)
	GCA_001613345_05459	Unannotated protein. (320 aa)
	GCA_001613345_05565	Unannotated protein. (226 aa)
	GCA_001613345_06405	Unannotated protein. (364 aa)
	GCA_001613345_06447	Unannotated protein. (327 aa)
	GCA_001613345_06586	Unannotated protein. (448 aa)
	GCA_001613345_06942	Unannotated protein. (305 aa)
	GCA_001613345_07111	Unannotated protein. (289 aa)
	GCA_001613345_07142	Unannotated protein. (344 aa)
	GCA_001613345_07320	Unannotated protein. (420 aa)
	GCA_001613345_07324	Unannotated protein. (189 aa)
	GCA_001613345_07531	Unannotated protein. (250 aa)
	GCA_001613345_07886	Unannotated protein. (404 aa)

Your Current Organism:

Nocardia uniformis

NCBI taxonomy Id: 1210100
Other names: N. uniformis NBRC 13702, Nocardia uniformis NBRC 13702

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001613345_00409	GCA_001613345_01579	Unannotated protein.	Unannotated protein.	0.477
GCA_001613345_00409	GCA_001613345_02028	Unannotated protein.	Unannotated protein.	0.477
GCA_001613345_00409	GCA_001613345_02689	Unannotated protein.	Unannotated protein.	0.527
GCA_001613345_00409	GCA_001613345_04906	Unannotated protein.	Unannotated protein.	0.527
GCA_001613345_00409	GCA_001613345_06447	Unannotated protein.	Unannotated protein.	0.585
GCA_001613345_00409	GCA_001613345_07111	Unannotated protein.	Unannotated protein.	0.569
GCA_001613345_00696	GCA_001613345_00924	Unannotated protein.	Unannotated protein.	0.911
GCA_001613345_00696	GCA_001613345_03008	Unannotated protein.	Unannotated protein.	0.418
GCA_001613345_00696	GCA_001613345_03029	Unannotated protein.	Unannotated protein.	0.586
GCA_001613345_00696	GCA_001613345_03803	Unannotated protein.	Unannotated protein.	0.506
GCA_001613345_00924	GCA_001613345_00696	Unannotated protein.	Unannotated protein.	0.911
GCA_001613345_00924	GCA_001613345_03008	Unannotated protein.	Unannotated protein.	0.418
GCA_001613345_00924	GCA_001613345_03029	Unannotated protein.	Unannotated protein.	0.588
GCA_001613345_00924	GCA_001613345_03803	Unannotated protein.	Unannotated protein.	0.506
GCA_001613345_00947	GCA_001613345_07531	Unannotated protein.	Unannotated protein.	0.865
GCA_001613345_01018	GCA_001613345_01504	Unannotated protein.	Unannotated protein.	0.561
GCA_001613345_01018	GCA_001613345_01579	Unannotated protein.	Unannotated protein.	0.899
GCA_001613345_01018	GCA_001613345_02028	Unannotated protein.	Unannotated protein.	0.904
GCA_001613345_01018	GCA_001613345_04245	Unannotated protein.	Unannotated protein.	0.801
GCA_001613345_01054	GCA_001613345_01165	Unannotated protein.	Unannotated protein.	0.983