(103 nodes) Glycerolipid metabolism network (Nocardia uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001613345_02732	Unannotated protein. (324 aa)
	GCA_001613345_02679	Unannotated protein. (396 aa)
	GCA_001613345_02588	Unannotated protein. (398 aa)
	GCA_001613345_02040	Unannotated protein. (416 aa)
	GCA_001613345_02036	Unannotated protein. (450 aa)
	GCA_001613345_04969	Unannotated protein. (504 aa)
	GCA_001613345_05115	Unannotated protein. (700 aa)
	GCA_001613345_03217	Unannotated protein. (419 aa)
	GCA_001613345_05154	Unannotated protein. (314 aa)
	GCA_001613345_05222	Unannotated protein. (344 aa)
	GCA_001613345_05347	Unannotated protein. (276 aa)
	GCA_001613345_05350	Unannotated protein. (451 aa)
	GCA_001613345_05396	Unannotated protein. (462 aa)
	GCA_001613345_05411	Unannotated protein. (475 aa)
	GCA_001613345_05440	Unannotated protein. (447 aa)
	GCA_001613345_03265	Unannotated protein. (333 aa)
	GCA_001613345_03349	Unannotated protein. (377 aa)
	GCA_001613345_03377	Unannotated protein. (467 aa)
	GCA_001613345_03404	Unannotated protein. (437 aa)
	GCA_001613345_03495	Unannotated protein. (350 aa)
	GCA_001613345_03588	Unannotated protein. (295 aa)
	GCA_001613345_03619	Unannotated protein. (338 aa)
	GCA_001613345_03621	Unannotated protein. (409 aa)
	GCA_001613345_03627	Unannotated protein. (543 aa)
	GCA_001613345_03667	Unannotated protein. (282 aa)
	GCA_001613345_03763	Unannotated protein. (313 aa)
	GCA_001613345_03782	Unannotated protein. (473 aa)
	GCA_001613345_03849	Unannotated protein. (240 aa)
	GCA_001613345_04002	Unannotated protein. (253 aa)
	GCA_001613345_04173	Unannotated protein. (357 aa)
	GCA_001613345_04178	Unannotated protein. (314 aa)
	GCA_001613345_04325	Unannotated protein. (490 aa)
	GCA_001613345_04439	Unannotated protein. (259 aa)
	GCA_001613345_04472	Unannotated protein. (311 aa)
	GCA_001613345_04476	Unannotated protein. (279 aa)
	GCA_001613345_05504	Unannotated protein. (506 aa)
	GCA_001613345_05506	Unannotated protein. (502 aa)
	GCA_001613345_05558	Unannotated protein. (444 aa)
	GCA_001613345_05571	Unannotated protein. (333 aa)
	GCA_001613345_05938	Unannotated protein. (402 aa)
	GCA_001613345_06003	Unannotated protein. (351 aa)
	GCA_001613345_06004	Unannotated protein. (324 aa)
	GCA_001613345_07565	Unannotated protein. (509 aa)
	GCA_001613345_07567	Unannotated protein. (339 aa)
	GCA_001613345_06099	Unannotated protein. (228 aa)
	GCA_001613345_06127	Unannotated protein. (72 aa)
	GCA_001613345_07583	Unannotated protein. (549 aa)
	GCA_001613345_07663	Unannotated protein. (350 aa)
	GCA_001613345_07668	Unannotated protein. (375 aa)
	GCA_001613345_07878	Unannotated protein. (267 aa)
	GCA_001613345_02009	Unannotated protein. (468 aa)
	GCA_001613345_02008	Unannotated protein. (358 aa)
	GCA_001613345_00020	Unannotated protein. (441 aa)
	GCA_001613345_00040	Unannotated protein. (478 aa)
	GCA_001613345_00044	Unannotated protein. (453 aa)
	GCA_001613345_00068	Unannotated protein. (367 aa)
	GCA_001613345_00070	Unannotated protein. (252 aa)
	GCA_001613345_00127	Unannotated protein. (333 aa)
	GCA_001613345_00128	Unannotated protein. (204 aa)
	GCA_001613345_00384	Unannotated protein. (271 aa)
	GCA_001613345_00411	Unannotated protein. (351 aa)
	GCA_001613345_00413	Unannotated protein. (346 aa)
	GCA_001613345_00414	Unannotated protein. (325 aa)
	GCA_001613345_00415	Unannotated protein. (346 aa)
	GCA_001613345_00416	Unannotated protein. (751 aa)
	GCA_001613345_00475	Unannotated protein. (350 aa)
	GCA_001613345_00517	Unannotated protein. (457 aa)
	GCA_001613345_00601	Unannotated protein. (489 aa)
	GCA_001613345_00700	Unannotated protein. (176 aa)
	GCA_001613345_00711	Unannotated protein. (319 aa)
	GCA_001613345_00754	Unannotated protein. (407 aa)
	GCA_001613345_01021	Unannotated protein. (228 aa)
	GCA_001613345_01243	Unannotated protein. (192 aa)
	GCA_001613345_01323	Unannotated protein. (419 aa)
	GCA_001613345_01466	Unannotated protein. (350 aa)
	GCA_001613345_04966	Unannotated protein. (502 aa)
	GCA_001613345_01509	Unannotated protein. (241 aa)
	GCA_001613345_01702	Unannotated protein. (215 aa)
	GCA_001613345_01728	Unannotated protein. (433 aa)
	GCA_001613345_01737	Unannotated protein. (276 aa)
	GCA_001613345_01750	Unannotated protein. (463 aa)
	GCA_001613345_01990	Unannotated protein. (363 aa)
	GCA_001613345_02586	Unannotated protein. (357 aa)
	GCA_001613345_02424	Unannotated protein. (331 aa)
	GCA_001613345_02386	Unannotated protein. (416 aa)
	GCA_001613345_06128	Unannotated protein. (303 aa)
	GCA_001613345_06338	Unannotated protein. (294 aa)
	GCA_001613345_06412	Unannotated protein. (469 aa)
	GCA_001613345_06427	Unannotated protein. (333 aa)
	GCA_001613345_02187	Unannotated protein. (319 aa)
	GCA_001613345_06750	Unannotated protein. (344 aa)
	GCA_001613345_06888	Unannotated protein. (518 aa)
	GCA_001613345_06927	Unannotated protein. (355 aa)
	GCA_001613345_06938	Unannotated protein. (293 aa)
	GCA_001613345_06956	Unannotated protein. (409 aa)
	GCA_001613345_07090	Unannotated protein. (362 aa)
	GCA_001613345_07147	Unannotated protein. (338 aa)
	GCA_001613345_07431	Unannotated protein. (293 aa)
	GCA_001613345_07506	Unannotated protein. (475 aa)
	GCA_001613345_02125	Unannotated protein. (510 aa)
	GCA_001613345_02123	Unannotated protein. (856 aa)
	GCA_001613345_02058	Unannotated protein. (286 aa)
	GCA_001613345_03016	Unannotated protein. (347 aa)

Your Current Organism:

Nocardia uniformis

NCBI taxonomy Id: 1210100
Other names: N. uniformis NBRC 13702, Nocardia uniformis NBRC 13702

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001613345_00020	GCA_001613345_00411	Unannotated protein.	Unannotated protein.	0.563
GCA_001613345_00020	GCA_001613345_00413	Unannotated protein.	Unannotated protein.	0.548
GCA_001613345_00020	GCA_001613345_00414	Unannotated protein.	Unannotated protein.	0.441
GCA_001613345_00020	GCA_001613345_00415	Unannotated protein.	Unannotated protein.	0.535
GCA_001613345_00020	GCA_001613345_01990	Unannotated protein.	Unannotated protein.	0.417
GCA_001613345_00020	GCA_001613345_02424	Unannotated protein.	Unannotated protein.	0.466
GCA_001613345_00020	GCA_001613345_03404	Unannotated protein.	Unannotated protein.	0.773
GCA_001613345_00020	GCA_001613345_03495	Unannotated protein.	Unannotated protein.	0.408
GCA_001613345_00020	GCA_001613345_04173	Unannotated protein.	Unannotated protein.	0.489
GCA_001613345_00020	GCA_001613345_06003	Unannotated protein.	Unannotated protein.	0.558
GCA_001613345_00020	GCA_001613345_06427	Unannotated protein.	Unannotated protein.	0.439
GCA_001613345_00020	GCA_001613345_06750	Unannotated protein.	Unannotated protein.	0.488
GCA_001613345_00040	GCA_001613345_00068	Unannotated protein.	Unannotated protein.	0.868
GCA_001613345_00040	GCA_001613345_00601	Unannotated protein.	Unannotated protein.	0.879
GCA_001613345_00040	GCA_001613345_02058	Unannotated protein.	Unannotated protein.	0.445
GCA_001613345_00040	GCA_001613345_07565	Unannotated protein.	Unannotated protein.	0.890
GCA_001613345_00040	GCA_001613345_07663	Unannotated protein.	Unannotated protein.	0.876
GCA_001613345_00040	GCA_001613345_07668	Unannotated protein.	Unannotated protein.	0.866
GCA_001613345_00044	GCA_001613345_00415	Unannotated protein.	Unannotated protein.	0.401
GCA_001613345_00044	GCA_001613345_00517	Unannotated protein.	Unannotated protein.	0.475