(46 nodes) 2-Oxocarboxylic acid metabolism network (Nocardia uniformis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_001613345_05162	Unannotated protein. (649 aa)
	GCA_001613345_07978	Unannotated protein. (361 aa)
	GCA_001613345_07898	Unannotated protein. (503 aa)
	GCA_001613345_07689	Unannotated protein. (152 aa)
	GCA_001613345_07585	Unannotated protein. (392 aa)
	GCA_001613345_07492	Unannotated protein. (336 aa)
	GCA_001613345_07258	Unannotated protein. (413 aa)
	GCA_001613345_07254	Unannotated protein. (145 aa)
	GCA_001613345_07220	Unannotated protein. (408 aa)
	GCA_001613345_07208	Unannotated protein. (401 aa)
	GCA_001613345_07207	Unannotated protein. (299 aa)
	GCA_001613345_07206	Unannotated protein. (405 aa)
	GCA_001613345_07205	Unannotated protein. (352 aa)
	GCA_001613345_06980	Unannotated protein. (183 aa)
	GCA_001613345_06589	Unannotated protein. (405 aa)
	GCA_001613345_05811	Unannotated protein. (485 aa)
	GCA_001613345_05297	Unannotated protein. (164 aa)
	GCA_001613345_05164	Unannotated protein. (613 aa)
	GCA_001613345_05161	Unannotated protein. (167 aa)
	GCA_001613345_05160	Unannotated protein. (337 aa)
	GCA_001613345_05137	Unannotated protein. (340 aa)
	GCA_001613345_05129	Unannotated protein. (474 aa)
	GCA_001613345_05128	Unannotated protein. (202 aa)
	GCA_001613345_05102	Unannotated protein. (380 aa)
	GCA_001613345_04675	Unannotated protein. (288 aa)
	GCA_001613345_04608	Unannotated protein. (467 aa)
	GCA_001613345_04567	Unannotated protein. (304 aa)
	GCA_001613345_04168	Unannotated protein. (403 aa)
	GCA_001613345_03525	Unannotated protein. (568 aa)
	GCA_001613345_03510	Unannotated protein. (422 aa)
	GCA_001613345_03300	Unannotated protein. (420 aa)
	GCA_001613345_03214	Unannotated protein. (543 aa)
	GCA_001613345_02368	Unannotated protein. (938 aa)
	GCA_001613345_02191	Unannotated protein. (370 aa)
	GCA_001613345_02084	Unannotated protein. (454 aa)
	GCA_001613345_02080	Unannotated protein. (378 aa)
	GCA_001613345_01639	Unannotated protein. (366 aa)
	GCA_001613345_01438	Unannotated protein. (162 aa)
	GCA_001613345_01326	Unannotated protein. (457 aa)
	GCA_001613345_00564	Unannotated protein. (344 aa)
	GCA_001613345_00563	Unannotated protein. (421 aa)
	GCA_001613345_00549	Unannotated protein. (605 aa)
	GCA_001613345_00520	Unannotated protein. (431 aa)
	GCA_001613345_00186	Unannotated protein. (117 aa)
	GCA_001613345_00172	Unannotated protein. (166 aa)
	GCA_001613345_00075	Unannotated protein. (569 aa)

Your Current Organism:

Nocardia uniformis

NCBI taxonomy Id: 1210100
Other names: N. uniformis NBRC 13702, Nocardia uniformis NBRC 13702

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_001613345_00075	GCA_001613345_00549	Unannotated protein.	Unannotated protein.	0.919
GCA_001613345_00075	GCA_001613345_01639	Unannotated protein.	Unannotated protein.	0.542
GCA_001613345_00075	GCA_001613345_02368	Unannotated protein.	Unannotated protein.	0.489
GCA_001613345_00075	GCA_001613345_03214	Unannotated protein.	Unannotated protein.	0.789
GCA_001613345_00075	GCA_001613345_03525	Unannotated protein.	Unannotated protein.	0.887
GCA_001613345_00075	GCA_001613345_04567	Unannotated protein.	Unannotated protein.	0.597
GCA_001613345_00075	GCA_001613345_05128	Unannotated protein.	Unannotated protein.	0.846
GCA_001613345_00075	GCA_001613345_05129	Unannotated protein.	Unannotated protein.	0.843
GCA_001613345_00075	GCA_001613345_05137	Unannotated protein.	Unannotated protein.	0.959
GCA_001613345_00075	GCA_001613345_05160	Unannotated protein.	Unannotated protein.	0.996
GCA_001613345_00075	GCA_001613345_05161	Unannotated protein.	Unannotated protein.	0.999
GCA_001613345_00075	GCA_001613345_05162	Unannotated protein.	Unannotated protein.	0.904
GCA_001613345_00075	GCA_001613345_05164	Unannotated protein.	Unannotated protein.	0.875
GCA_001613345_00075	GCA_001613345_06589	Unannotated protein.	Unannotated protein.	0.655
GCA_001613345_00075	GCA_001613345_07254	Unannotated protein.	Unannotated protein.	0.919
GCA_001613345_00075	GCA_001613345_07978	Unannotated protein.	Unannotated protein.	0.956
GCA_001613345_00172	GCA_001613345_07206	Unannotated protein.	Unannotated protein.	0.493
GCA_001613345_00172	GCA_001613345_07207	Unannotated protein.	Unannotated protein.	0.519
GCA_001613345_00186	GCA_001613345_02191	Unannotated protein.	Unannotated protein.	0.668
GCA_001613345_00186	GCA_001613345_04168	Unannotated protein.	Unannotated protein.	0.668