(20 nodes) Bacterial extracellular solute-binding protein network (Pseudarthrobacter sulfonivorans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV40927.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	ALV43983.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	ALV43984.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	ALV42440.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	ALV42546.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	ALV42634.1	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	ALV39771.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	ALV40656.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	ALV43776.1	Bicyclomycin resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (470 aa)
	ALV41987.1	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	ALV40815.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)
	ALV42242.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (427 aa)
	ALV41259.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)
	ALV41363.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	ALV43880.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ALV43905.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)
	ALV41910.1	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	ALV42049.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	AU252_14160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
	ALV43975.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (436 aa)

Your Current Organism:

Pseudarthrobacter sulfonivorans

NCBI taxonomy Id: 121292
Other names: ATCC BAA-112, Arthrobacter sp. ALL, Arthrobacter sulfonivorans, Arthrobacter sulfonivorans Borodina et al. 2002, DSM 14002, JCM 13520, P. sulfonivorans, Pseudarthrobacter sulfonivorans (Borodina et al. 2002) Busse 2016, strain ALL

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV39771.1	ALV41910.1	AU252_00155	AU252_12675	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ALV39771.1	ALV43975.1	AU252_00155	AU252_14435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ALV40815.1	ALV41910.1	AU252_06255	AU252_12675	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
ALV40927.1	ALV42546.1	AU252_06960	AU252_16490	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
ALV41259.1	ALV41910.1	AU252_08940	AU252_12675	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
ALV41363.1	ALV43880.1	AU252_09545	AU252_09975	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ALV41363.1	ALV43984.1	AU252_09545	AU252_14745	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
ALV41910.1	ALV39771.1	AU252_12675	AU252_00155	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
ALV41910.1	ALV40815.1	AU252_12675	AU252_06255	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
ALV41910.1	ALV41259.1	AU252_12675	AU252_08940	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
ALV41910.1	ALV43983.1	AU252_12675	AU252_14700	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ALV41910.1	ALV43984.1	AU252_12675	AU252_14745	Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
ALV41987.1	ALV42242.1	AU252_13130	AU252_14720	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
ALV42242.1	ALV41987.1	AU252_14720	AU252_13130	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
ALV42242.1	ALV43984.1	AU252_14720	AU252_14745	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
ALV42546.1	ALV40927.1	AU252_16490	AU252_06960	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552
ALV43880.1	ALV41363.1	AU252_09975	AU252_09545	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.618
ALV43880.1	ALV43975.1	AU252_09975	AU252_14435	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469
ALV43975.1	ALV39771.1	AU252_14435	AU252_00155	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ALV43975.1	ALV43880.1	AU252_14435	AU252_09975	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469

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