(31 nodes) Positive regulation of mRNA catabolic process network (Colletotrichum fructicola)

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Predicted Interactions

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Your Input:
	PAN2	PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent [...] (1130 aa)
	CGGC5_6769	Ccr4-not core complex subunit. (495 aa)
	CGGC5_5332	3 exoribonuclease family protein. (311 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (178 aa)
	CGGC5_4957	RNA polymerase ii subunit 7. (171 aa)
	CGGC5_4858	Ccr4-not transcription subunit 3. (625 aa)
	CGGC5_511	RNA binding protein. (1095 aa)
	CGGC5_4186	Decapping enzyme. (128 aa)
	CGGC5_4478	Caf1 family ribonuclease. (619 aa)
	CGGC5_13104	mRNA decapping. (306 aa)
	CGGC5_1878	3 exoribonuclease. (298 aa)
	CGGC5_13823	Ccr4-not transcription complex subunit. (2186 aa)
	CGGC5_13741	Exosome complex exonuclease. (908 aa)
	CGGC5_14034	Glucose-repressible alcohol dehydrogenase transcriptional effector. (765 aa)
	CGGC5_2114	Topisomerase ii associated protein. (839 aa)
	CGGC5_263	mRNA binding protein pumilio. (853 aa)
	PAN3	PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exo [...] (449 aa)
	CGGC5_15018	G-protein beta subunit. (287 aa)
	CGGC5_2860	Decapping enzyme dcp2. (879 aa)
	CGGC5_3377	Exosome complex exonuclease rrp4. (343 aa)
	CGGC5_3655	Pumilio-family rna binding repeat protein. (769 aa)
	CGGC5_3936	Exosome complex exonuclease rrp40. (242 aa)
	CGGC5_8366	Polymerase II polypeptide d. (144 aa)
	CGGC5_9255	Leucine rich repeat domain protein. (530 aa)
	CGGC5_11312	Poly rna polymerase cid13. (1059 aa)
	CGGC5_11666	Yt521-b-like splicing. (617 aa)
	CGGC5_11764	3 exoribonuclease family protein. (315 aa)
	CGGC5_12254	Uncharacterized protein. (275 aa)
	CGGC5_1661	Pumilio domain-containing protein. (997 aa)
	CGGC5_13262	GTP-binding protein 1. (649 aa)
	CGGC5_7999	Eukaryotic peptide chain release factor gtp-binding subunit. (704 aa)

Your Current Organism:

Colletotrichum fructicola

NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGC5_11312	CGGC5_4478	L2FP81	L2GD52	Poly rna polymerase cid13.	Caf1 family ribonuclease.	0.457
CGGC5_11312	LSM1	L2FP81	L2G996	Poly rna polymerase cid13.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.465
CGGC5_11666	CGGC5_13741	L2FN48	L2FG36	Yt521-b-like splicing.	Exosome complex exonuclease.	0.680
CGGC5_11764	CGGC5_13741	L2FMM2	L2FG36	3 exoribonuclease family protein.	Exosome complex exonuclease.	0.976
CGGC5_11764	CGGC5_1878	L2FMM2	L2FHL9	3 exoribonuclease family protein.	3 exoribonuclease.	0.999
CGGC5_11764	CGGC5_3377	L2FMM2	L2GEY3	3 exoribonuclease family protein.	Exosome complex exonuclease rrp4.	0.999
CGGC5_11764	CGGC5_3936	L2FMM2	L2GEU0	3 exoribonuclease family protein.	Exosome complex exonuclease rrp40.	0.999
CGGC5_11764	CGGC5_4478	L2FMM2	L2GD52	3 exoribonuclease family protein.	Caf1 family ribonuclease.	0.643
CGGC5_11764	CGGC5_5332	L2FMM2	L2G865	3 exoribonuclease family protein.	3 exoribonuclease family protein.	0.999
CGGC5_12254	CGGC5_1878	L2FL48	L2FHL9	Uncharacterized protein.	3 exoribonuclease.	0.732
CGGC5_12254	CGGC5_2114	L2FL48	L2FEB6	Uncharacterized protein.	Topisomerase ii associated protein.	0.971
CGGC5_12254	CGGC5_3377	L2FL48	L2GEY3	Uncharacterized protein.	Exosome complex exonuclease rrp4.	0.754
CGGC5_12254	CGGC5_3936	L2FL48	L2GEU0	Uncharacterized protein.	Exosome complex exonuclease rrp40.	0.682
CGGC5_12254	CGGC5_4186	L2FL48	L2GCA0	Uncharacterized protein.	Decapping enzyme.	0.978
CGGC5_12254	CGGC5_4478	L2FL48	L2GD52	Uncharacterized protein.	Caf1 family ribonuclease.	0.743
CGGC5_12254	CGGC5_5332	L2FL48	L2G865	Uncharacterized protein.	3 exoribonuclease family protein.	0.784
CGGC5_12254	CGGC5_6769	L2FL48	L2G3Z8	Uncharacterized protein.	Ccr4-not core complex subunit.	0.888
CGGC5_12254	LSM1	L2FL48	L2G996	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.913
CGGC5_13104	CGGC5_2860	L2FI10	L2GH35	mRNA decapping.	Decapping enzyme dcp2.	0.474
CGGC5_13104	CGGC5_4186	L2FI10	L2GCA0	mRNA decapping.	Decapping enzyme.	0.476