STRINGSTRING
CGGC5_4957 CGGC5_4957 CGGC5_5269 CGGC5_5269 CGGC5_3117 CGGC5_3117 CGGC5_3377 CGGC5_3377 CGGC5_3818 CGGC5_3818 CGGC5_9397 CGGC5_9397 CGGC5_11576 CGGC5_11576 CGGC5_1991 CGGC5_1991
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CGGC5_4957RNA polymerase ii subunit 7. (171 aa)
CGGC5_5269rRNA biogenesis protein. (1773 aa)
CGGC5_3117Eukaryotic translation initiation factor 2 alpha subunit. (311 aa)
CGGC5_3377Exosome complex exonuclease rrp4. (343 aa)
CGGC5_3818Exosomal core protein csl4. (238 aa)
CGGC5_9397Transcription elongation factor Spt6; Plays a role in maintenance of chromatin structure during RNA polymerase II transcription elongation thereby repressing transcription initiation from cryptic promoters. Mediates the reassembly of nucleosomes onto the promoters of at least a selected set of genes during repression; the nucleosome reassembly is essential for transcriptional repression; Belongs to the SPT6 family. (1409 aa)
CGGC5_11576ATP-dependent RNA helicase dhx8. (1119 aa)
CGGC5_1991Exosome complex exonuclease exoribonuclease; Belongs to the RNR ribonuclease family. (953 aa)
Your Current Organism:
Colletotrichum fructicola
NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5
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