(38 nodes) Toll Like Receptor 3 (TLR3) Cascade network (Colletotrichum fructicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CGGC5_6264	Ubiquitin. (167 aa)
	CGGC5_4626	Ser thr protein phosphatase family. (136 aa)
	CGGC5_5228	Ubiquitin. (229 aa)
	CGGC5_5649	Protein phosphatase pp2a regulatory subunit a. (622 aa)
	CGGC5_5835	BZIP domain-containing protein. (276 aa)
	CGGC5_5836	Cia30 family protein. (163 aa)
	CGGC5_6795	Protein-tyrosine phosphatase. (617 aa)
	CGGC5_770	Uncharacterized protein. (246 aa)
	CGGC5_7483	Transcription factor atf21. (315 aa)
	CGGC5_7921	Transcription factor atf21. (372 aa)
	CGGC5_15082	BZIP transcription factor. (536 aa)
	CGGC5_14138	Calcium binding protein. (275 aa)
	CGGC5_12468	Uncharacterized protein. (417 aa)
	CGGC5_12286	Tyrosine phosphatase. (303 aa)
	CGGC5_1222	Caleosin domain containing protein. (262 aa)
	CGGC5_10189	Dual specificity phosphatase, putative. (413 aa)
	CGGC5_10695	Het domain-containing protein. (306 aa)
	CGGC5_10172	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation. (97 aa)
	CGGC5_10254	Leucine rich repeat protein. (1241 aa)
	CGGC5_10136	Uncharacterized protein. (279 aa)
	CGGC5_9396	Protein kinase byr1. (522 aa)
	CGGC5_9856	Uncharacterized protein. (379 aa)
	CGGC5_9444	Dual specificity catalytic domain containing protein. (391 aa)
	CGGC5_13804	Uncharacterized protein. (591 aa)
	CGGC5_13208	Traf-like signal. (461 aa)
	CGGC5_13714	Tyrosine phosphatase. (296 aa)
	CGGC5_13054	BZIP transcription factor. (232 aa)
	CGGC5_12891	Leucine rich repeat protein. (685 aa)
	CGGC5_13039	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (420 aa)
	CGGC5_15147	Calcium channel subunit mid1. (643 aa)
	CGGC5_15219	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (355 aa)
	CGGC5_2560	Integral membrane protein. (1081 aa)
	CGGC5_3391	TYR_PHOSPHATASE_2 domain-containing protein. (286 aa)
	CGGC5_9113	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (359 aa)
	CGGC5_450	Serine/threonine-protein phosphatase. (328 aa)
	CGGC5_292	Uncharacterized protein. (424 aa)
	CGGC5_3848	Transcription factor atf21. (317 aa)
	CGGC5_4457	MAP kinase kinase. (521 aa)

Your Current Organism:

Colletotrichum fructicola

NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGC5_10172	CGGC5_10189	L2FST1	L2FSM7	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Dual specificity phosphatase, putative.	0.601
CGGC5_10172	CGGC5_1222	L2FST1	L2FRJ2	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Caleosin domain containing protein.	0.601
CGGC5_10172	CGGC5_13039	L2FST1	L2FID7	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.486
CGGC5_10172	CGGC5_13054	L2FST1	L2FHU3	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	BZIP transcription factor.	0.942
CGGC5_10172	CGGC5_13208	L2FST1	L2FGS7	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Traf-like signal.	0.722
CGGC5_10172	CGGC5_14138	L2FST1	L2FDI1	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Calcium binding protein.	0.601
CGGC5_10172	CGGC5_15082	L2FST1	L2FAK6	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	BZIP transcription factor.	0.569
CGGC5_10172	CGGC5_15147	L2FST1	L2GK28	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Calcium channel subunit mid1.	0.486
CGGC5_10172	CGGC5_15219	L2FST1	L2GIQ8	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.486
CGGC5_10172	CGGC5_292	L2FST1	L2GFB4	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Uncharacterized protein.	0.569
CGGC5_10172	CGGC5_3848	L2FST1	L2GE91	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Transcription factor atf21.	0.569
CGGC5_10172	CGGC5_6795	L2FST1	L2G5Q9	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Protein-tyrosine phosphatase.	0.601
CGGC5_10172	CGGC5_7483	L2FST1	L2G2B8	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Transcription factor atf21.	0.569
CGGC5_10172	CGGC5_770	L2FST1	L2G412	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Uncharacterized protein.	0.754
CGGC5_10172	CGGC5_7921	L2FST1	L2FZY5	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Transcription factor atf21.	0.569
CGGC5_10172	CGGC5_9113	L2FST1	L2FWD1	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.486
CGGC5_10172	CGGC5_9444	L2FST1	L2FVM5	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	Dual specificity catalytic domain containing protein.	0.601
CGGC5_10189	CGGC5_10172	L2FSM7	L2FST1	Dual specificity phosphatase, putative.	37S ribosomal protein mrp10, mitochondrial; Involved in mitochondrial genome encoded proteins translation.	0.601
CGGC5_10189	CGGC5_12468	L2FSM7	L2FJP8	Dual specificity phosphatase, putative.	Uncharacterized protein.	0.601
CGGC5_10189	CGGC5_13039	L2FSM7	L2FID7	Dual specificity phosphatase, putative.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.780