(9 nodes) FCERI mediated NF-kB activation network (Colletotrichum fructicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CGGC5_13208	Traf-like signal. (461 aa)
	CGGC5_2110	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (1103 aa)
	CGGC5_13808	Retrotransposon protein. (325 aa)
	CGGC5_10537	F-box and wd40 domain-containing protein. (705 aa)
	CGGC5_10174	F-box wd-40 repeat-containing protein. (1010 aa)
	CGGC5_5836	Cia30 family protein. (163 aa)
	CGGC5_6264	Ubiquitin. (167 aa)
	CGGC5_5835	BZIP domain-containing protein. (276 aa)
	CGGC5_5228	Ubiquitin. (229 aa)

Your Current Organism:

Colletotrichum fructicola

NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGC5_10174	CGGC5_5228	L2FSL7	L2GAM4	F-box wd-40 repeat-containing protein.	Ubiquitin.	0.822
CGGC5_10174	CGGC5_5835	L2FSL7	L2G7H0	F-box wd-40 repeat-containing protein.	BZIP domain-containing protein.	0.700
CGGC5_10174	CGGC5_5836	L2FSL7	L2G6J3	F-box wd-40 repeat-containing protein.	Cia30 family protein.	0.700
CGGC5_10174	CGGC5_6264	L2FSL7	L2G765	F-box wd-40 repeat-containing protein.	Ubiquitin.	0.700
CGGC5_10537	CGGC5_5228	L2FSA4	L2GAM4	F-box and wd40 domain-containing protein.	Ubiquitin.	0.822
CGGC5_10537	CGGC5_5835	L2FSA4	L2G7H0	F-box and wd40 domain-containing protein.	BZIP domain-containing protein.	0.700
CGGC5_10537	CGGC5_5836	L2FSA4	L2G6J3	F-box and wd40 domain-containing protein.	Cia30 family protein.	0.700
CGGC5_10537	CGGC5_6264	L2FSA4	L2G765	F-box and wd40 domain-containing protein.	Ubiquitin.	0.700
CGGC5_13208	CGGC5_2110	L2FGS7	L2FEQ2	Traf-like signal.	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	0.784
CGGC5_13208	CGGC5_5228	L2FGS7	L2GAM4	Traf-like signal.	Ubiquitin.	0.990
CGGC5_13208	CGGC5_5835	L2FGS7	L2G7H0	Traf-like signal.	BZIP domain-containing protein.	0.940
CGGC5_13208	CGGC5_5836	L2FGS7	L2G6J3	Traf-like signal.	Cia30 family protein.	0.940
CGGC5_13208	CGGC5_6264	L2FGS7	L2G765	Traf-like signal.	Ubiquitin.	0.940
CGGC5_2110	CGGC5_13208	L2FEQ2	L2FGS7	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.	Traf-like signal.	0.784
CGGC5_5228	CGGC5_10174	L2GAM4	L2FSL7	Ubiquitin.	F-box wd-40 repeat-containing protein.	0.822
CGGC5_5228	CGGC5_10537	L2GAM4	L2FSA4	Ubiquitin.	F-box and wd40 domain-containing protein.	0.822
CGGC5_5228	CGGC5_13208	L2GAM4	L2FGS7	Ubiquitin.	Traf-like signal.	0.990
CGGC5_5228	CGGC5_5835	L2GAM4	L2G7H0	Ubiquitin.	BZIP domain-containing protein.	0.949
CGGC5_5228	CGGC5_5836	L2GAM4	L2G6J3	Ubiquitin.	Cia30 family protein.	0.949
CGGC5_5228	CGGC5_6264	L2GAM4	L2G765	Ubiquitin.	Ubiquitin.	0.961