(20 nodes) Ubiquitin Mediated Degradation of Phosphorylated Cdc25A network (Colletotrichum fructicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CGGC5_5836	Cia30 family protein. (163 aa)
	CGGC5_7789	Uncharacterized protein. (318 aa)
	CGGC5_8465	Uncharacterized protein. (215 aa)
	CGGC5_10219	Meiosis-specific serine threonine-protein kinase mek1. (1217 aa)
	CGGC5_10407	Tol-like protein. (1036 aa)
	CGGC5_11005	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family. (833 aa)
	CGGC5_11139	Ran1-like protein kinase; Belongs to the protein kinase superfamily. (498 aa)
	CGGC5_1495	Uncharacterized protein. (249 aa)
	CGGC5_1497	Uncharacterized protein. (346 aa)
	CGGC5_13382	Serine threonine protein. (541 aa)
	CGGC5_14095	Serine threonine protein. (638 aa)
	CGGC5_255	Serine threonine-protein kinase hal4; Belongs to the protein kinase superfamily. (485 aa)
	CGGC5_5228	Ubiquitin. (229 aa)
	CGGC5_4624	Cell cycle control protein tyrosine phosphatase. (553 aa)
	CGGC5_3200	Kinase domain containing protein. (711 aa)
	CGGC5_2560	Integral membrane protein. (1081 aa)
	CGGC5_4959	Serine threonine-protein kinase chk2. (688 aa)
	CGGC5_5835	BZIP domain-containing protein. (276 aa)
	CGGC5_6264	Ubiquitin. (167 aa)
	CGGC5_6509	Calcium calmodulin-dependent protein kinase type 1b. (687 aa)

Your Current Organism:

Colletotrichum fructicola

NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGC5_10219	CGGC5_11005	L2FT33	L2FPT2	Meiosis-specific serine threonine-protein kinase mek1.	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	0.647
CGGC5_10219	CGGC5_13382	L2FT33	L2FGC1	Meiosis-specific serine threonine-protein kinase mek1.	Serine threonine protein.	0.958
CGGC5_10219	CGGC5_255	L2FT33	L2FCY2	Meiosis-specific serine threonine-protein kinase mek1.	Serine threonine-protein kinase hal4; Belongs to the protein kinase superfamily.	0.693
CGGC5_10219	CGGC5_3200	L2FT33	L2GFM4	Meiosis-specific serine threonine-protein kinase mek1.	Kinase domain containing protein.	0.718
CGGC5_10219	CGGC5_4624	L2FT33	L2GBL2	Meiosis-specific serine threonine-protein kinase mek1.	Cell cycle control protein tyrosine phosphatase.	0.893
CGGC5_10219	CGGC5_4959	L2FT33	L2GAG8	Meiosis-specific serine threonine-protein kinase mek1.	Serine threonine-protein kinase chk2.	0.972
CGGC5_10219	CGGC5_6509	L2FT33	L2G5I4	Meiosis-specific serine threonine-protein kinase mek1.	Calcium calmodulin-dependent protein kinase type 1b.	0.721
CGGC5_10219	CGGC5_8465	L2FT33	L2FZ72	Meiosis-specific serine threonine-protein kinase mek1.	Uncharacterized protein.	0.647
CGGC5_10407	CGGC5_11005	L2FST8	L2FPT2	Tol-like protein.	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	0.647
CGGC5_10407	CGGC5_13382	L2FST8	L2FGC1	Tol-like protein.	Serine threonine protein.	0.647
CGGC5_10407	CGGC5_255	L2FST8	L2FCY2	Tol-like protein.	Serine threonine-protein kinase hal4; Belongs to the protein kinase superfamily.	0.647
CGGC5_10407	CGGC5_3200	L2FST8	L2GFM4	Tol-like protein.	Kinase domain containing protein.	0.647
CGGC5_10407	CGGC5_4624	L2FST8	L2GBL2	Tol-like protein.	Cell cycle control protein tyrosine phosphatase.	0.662
CGGC5_10407	CGGC5_8465	L2FST8	L2FZ72	Tol-like protein.	Uncharacterized protein.	0.647
CGGC5_11005	CGGC5_10219	L2FPT2	L2FT33	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Meiosis-specific serine threonine-protein kinase mek1.	0.647
CGGC5_11005	CGGC5_10407	L2FPT2	L2FST8	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Tol-like protein.	0.647
CGGC5_11005	CGGC5_14095	L2FPT2	L2FE48	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Serine threonine protein.	0.647
CGGC5_11005	CGGC5_1495	L2FPT2	L2FNL6	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Uncharacterized protein.	0.647
CGGC5_11005	CGGC5_1497	L2FPT2	L2FN40	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Uncharacterized protein.	0.647
CGGC5_11005	CGGC5_4624	L2FPT2	L2GBL2	Nitrogen permease reactivator protein; Belongs to the GroES chaperonin family.	Cell cycle control protein tyrosine phosphatase.	0.702