(9 nodes) (2022) Identification and characterization of Colletotrichum fioriniae and C. fructicola that cause anthracnose in pecan. network (Colletotrichum fructicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CGGC5_13604	Chitin synthase. (660 aa)
	CGGC5_3306	Glyceraldehyde-3-phosphate dehydrogenase. (338 aa)
	CGGC5_4832	Calmodulin. (159 aa)
	CGGC5_5915	Calmodulin; Belongs to the calmodulin family. (113 aa)
	CGGC5_953	Calmodulin; Belongs to the calmodulin family. (169 aa)
	CGGC5_11021	Chitin synthase; Plays a major role in cell wall biogenesis. (898 aa)
	CGGC5_1611	Chitin synthase; Plays a major role in cell wall biogenesis. (901 aa)
	CGGC5_12948	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1865 aa)
	CGGC5_12949	Chitin synthase. (1759 aa)

Your Current Organism:

Colletotrichum fructicola

NCBI taxonomy Id: 1213859
Other names: C. fructicola Nara gc5, Colletotrichum fructicola Nara gc5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CGGC5_11021	CGGC5_12948	L2FPJ6	L2FIV4	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.632
CGGC5_11021	CGGC5_12949	L2FPJ6	L2FHZ9	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase.	0.629
CGGC5_11021	CGGC5_13604	L2FPJ6	L2FFQ6	Chitin synthase; Plays a major role in cell wall biogenesis.	Chitin synthase.	0.572
CGGC5_11021	CGGC5_3306	L2FPJ6	L2GF96	Chitin synthase; Plays a major role in cell wall biogenesis.	Glyceraldehyde-3-phosphate dehydrogenase.	0.830
CGGC5_11021	CGGC5_4832	L2FPJ6	L2GB20	Chitin synthase; Plays a major role in cell wall biogenesis.	Calmodulin.	0.634
CGGC5_11021	CGGC5_5915	L2FPJ6	L2G7Q7	Chitin synthase; Plays a major role in cell wall biogenesis.	Calmodulin; Belongs to the calmodulin family.	0.684
CGGC5_11021	CGGC5_953	L2FPJ6	L2FWX4	Chitin synthase; Plays a major role in cell wall biogenesis.	Calmodulin; Belongs to the calmodulin family.	0.684
CGGC5_12948	CGGC5_11021	L2FIV4	L2FPJ6	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.632
CGGC5_12948	CGGC5_12949	L2FIV4	L2FHZ9	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Chitin synthase.	0.623
CGGC5_12948	CGGC5_1611	L2FIV4	L2FNM0	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.617
CGGC5_12948	CGGC5_3306	L2FIV4	L2GF96	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Glyceraldehyde-3-phosphate dehydrogenase.	0.830
CGGC5_12948	CGGC5_4832	L2FIV4	L2GB20	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Calmodulin.	0.634
CGGC5_12948	CGGC5_5915	L2FIV4	L2G7Q7	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Calmodulin; Belongs to the calmodulin family.	0.634
CGGC5_12948	CGGC5_953	L2FIV4	L2FWX4	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Calmodulin; Belongs to the calmodulin family.	0.634
CGGC5_12949	CGGC5_11021	L2FHZ9	L2FPJ6	Chitin synthase.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.629
CGGC5_12949	CGGC5_12948	L2FHZ9	L2FIV4	Chitin synthase.	Chitin synthase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.623
CGGC5_12949	CGGC5_1611	L2FHZ9	L2FNM0	Chitin synthase.	Chitin synthase; Plays a major role in cell wall biogenesis.	0.619
CGGC5_12949	CGGC5_3306	L2FHZ9	L2GF96	Chitin synthase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.830
CGGC5_12949	CGGC5_4832	L2FHZ9	L2GB20	Chitin synthase.	Calmodulin.	0.634
CGGC5_12949	CGGC5_5915	L2FHZ9	L2G7Q7	Chitin synthase.	Calmodulin; Belongs to the calmodulin family.	0.634