STRINGSTRING
GCA_000730585_04194 GCA_000730585_04194 GCA_000730585_04206 GCA_000730585_04206 rpoS rpoS GCA_000730585_04617 GCA_000730585_04617 GCA_000730585_04629 GCA_000730585_04629 GCA_000730585_04736 GCA_000730585_04736 GCA_000730585_04759 GCA_000730585_04759 GCA_000730585_04774 GCA_000730585_04774 GCA_000730585_04845 GCA_000730585_04845 GCA_000730585_04855 GCA_000730585_04855 GCA_000730585_04919 GCA_000730585_04919 GCA_000730585_04992 GCA_000730585_04992 GCA_000730585_05060 GCA_000730585_05060 GCA_000730585_05073 GCA_000730585_05073 GCA_000730585_05142 GCA_000730585_05142 GCA_000730585_05298 GCA_000730585_05298 GCA_000730585_05308 GCA_000730585_05308 GCA_000730585_05335 GCA_000730585_05335 GCA_000730585_05337 GCA_000730585_05337 GCA_000730585_05338 GCA_000730585_05338 GCA_000730585_05507 GCA_000730585_05507 GCA_000730585_05639 GCA_000730585_05639 GCA_000730585_05665 GCA_000730585_05665 GCA_000730585_00099 GCA_000730585_00099 GCA_000730585_00130 GCA_000730585_00130 GCA_000730585_00206 GCA_000730585_00206 GCA_000730585_00320 GCA_000730585_00320 GCA_000730585_00425 GCA_000730585_00425 GCA_000730585_00426 GCA_000730585_00426 GCA_000730585_00551 GCA_000730585_00551 GCA_000730585_00555 GCA_000730585_00555 GCA_000730585_00852 GCA_000730585_00852 GCA_000730585_00853 GCA_000730585_00853 GCA_000730585_00903 GCA_000730585_00903 GCA_000730585_00915 GCA_000730585_00915 GCA_000730585_01199 GCA_000730585_01199 GCA_000730585_01231 GCA_000730585_01231 GCA_000730585_01261 GCA_000730585_01261 GCA_000730585_01308 GCA_000730585_01308 GCA_000730585_01322 GCA_000730585_01322 GCA_000730585_01370 GCA_000730585_01370 GCA_000730585_01375 GCA_000730585_01375 GCA_000730585_01389 GCA_000730585_01389 GCA_000730585_01390 GCA_000730585_01390 csrA csrA GCA_000730585_01495 GCA_000730585_01495 GCA_000730585_01549 GCA_000730585_01549 GCA_000730585_01739 GCA_000730585_01739 GCA_000730585_01745 GCA_000730585_01745 GCA_000730585_01761 GCA_000730585_01761 GCA_000730585_01823 GCA_000730585_01823 GCA_000730585_01826 GCA_000730585_01826 GCA_000730585_01836 GCA_000730585_01836 GCA_000730585_01839 GCA_000730585_01839 GCA_000730585_02329 GCA_000730585_02329 GCA_000730585_02394 GCA_000730585_02394 fur fur GCA_000730585_02492 GCA_000730585_02492 dksA dksA GCA_000730585_02597 GCA_000730585_02597 GCA_000730585_02618 GCA_000730585_02618 GCA_000730585_02625 GCA_000730585_02625 GCA_000730585_02718 GCA_000730585_02718 GCA_000730585_02766 GCA_000730585_02766 GCA_000730585_02916 GCA_000730585_02916 GCA_000730585_02961 GCA_000730585_02961 csrA-2 csrA-2 GCA_000730585_03018 GCA_000730585_03018 GCA_000730585_03041 GCA_000730585_03041 csrA-3 csrA-3 GCA_000730585_03058 GCA_000730585_03058 GCA_000730585_03119 GCA_000730585_03119 GCA_000730585_05703 GCA_000730585_05703 GCA_000730585_03128 GCA_000730585_03128 GCA_000730585_03166 GCA_000730585_03166 GCA_000730585_03231 GCA_000730585_03231 GCA_000730585_03246 GCA_000730585_03246 GCA_000730585_03253 GCA_000730585_03253 GCA_000730585_03254 GCA_000730585_03254 GCA_000730585_03329 GCA_000730585_03329 GCA_000730585_03418 GCA_000730585_03418 GCA_000730585_03671 GCA_000730585_03671 GCA_000730585_03680 GCA_000730585_03680 GCA_000730585_03684 GCA_000730585_03684 GCA_000730585_03688 GCA_000730585_03688 fliA fliA GCA_000730585_03823 GCA_000730585_03823 GCA_000730585_03932 GCA_000730585_03932 GCA_000730585_04039 GCA_000730585_04039 GCA_000730585_04172 GCA_000730585_04172 GCA_000730585_04179 GCA_000730585_04179 lepA lepA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000730585_04194Unannotated protein. (224 aa)
GCA_000730585_04206Unannotated protein. (188 aa)
rpoSUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (335 aa)
GCA_000730585_04617Unannotated protein. (238 aa)
GCA_000730585_04629Unannotated protein. (262 aa)
GCA_000730585_04736Unannotated protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
GCA_000730585_04759Unannotated protein. (246 aa)
GCA_000730585_04774Unannotated protein. (107 aa)
GCA_000730585_04845Unannotated protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
GCA_000730585_04855Unannotated protein. (229 aa)
GCA_000730585_04919Unannotated protein. (258 aa)
GCA_000730585_04992Unannotated protein. (367 aa)
GCA_000730585_05060Unannotated protein; Belongs to the Rsd/AlgQ family. (156 aa)
GCA_000730585_05073Unannotated protein; Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family. (221 aa)
GCA_000730585_05142Unannotated protein. (147 aa)
GCA_000730585_05298Unannotated protein. (502 aa)
GCA_000730585_05308Unannotated protein. (142 aa)
GCA_000730585_05335Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (489 aa)
GCA_000730585_05337Unannotated protein. (154 aa)
GCA_000730585_05338Unannotated protein; Displays ATPase and GTPase activities. (284 aa)
GCA_000730585_05507Unannotated protein. (224 aa)
GCA_000730585_05639Unannotated protein. (192 aa)
GCA_000730585_05665Unannotated protein. (261 aa)
GCA_000730585_00099Unannotated protein. (258 aa)
GCA_000730585_00130Unannotated protein. (264 aa)
GCA_000730585_00206Unannotated protein. (233 aa)
GCA_000730585_00320Unannotated protein. (402 aa)
GCA_000730585_00425Unannotated protein. (211 aa)
GCA_000730585_00426Unannotated protein. (214 aa)
GCA_000730585_00551Unannotated protein. (210 aa)
GCA_000730585_00555Unannotated protein. (145 aa)
GCA_000730585_00852Unannotated protein. (316 aa)
GCA_000730585_00853Unannotated protein. (453 aa)
GCA_000730585_00903Unannotated protein. (232 aa)
GCA_000730585_00915Unannotated protein. (745 aa)
GCA_000730585_01199Unannotated protein. (247 aa)
GCA_000730585_01231Unannotated protein. (264 aa)
GCA_000730585_01261Unannotated protein. (323 aa)
GCA_000730585_01308Unannotated protein. (538 aa)
GCA_000730585_01322Unannotated protein. (198 aa)
GCA_000730585_01370Unannotated protein. (241 aa)
GCA_000730585_01375Unannotated protein. (225 aa)
GCA_000730585_01389Unannotated protein. (917 aa)
GCA_000730585_01390Unannotated protein. (238 aa)
csrAUnannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (61 aa)
GCA_000730585_01495Unannotated protein. (210 aa)
GCA_000730585_01549Unannotated protein; Belongs to the LysR transcriptional regulatory family. (304 aa)
GCA_000730585_01739Unannotated protein. (260 aa)
GCA_000730585_01745Unannotated protein. (509 aa)
GCA_000730585_01761Unannotated protein. (191 aa)
GCA_000730585_01823Unannotated protein. (292 aa)
GCA_000730585_01826Unannotated protein. (233 aa)
GCA_000730585_01836Unannotated protein. (236 aa)
GCA_000730585_01839Unannotated protein. (372 aa)
GCA_000730585_02329Unannotated protein. (201 aa)
GCA_000730585_02394Unannotated protein. (220 aa)
furUnannotated protein; Belongs to the Fur family. (134 aa)
GCA_000730585_02492Unannotated protein. (984 aa)
dksAUnannotated protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (148 aa)
GCA_000730585_02597Unannotated protein. (469 aa)
GCA_000730585_02618Unannotated protein. (598 aa)
GCA_000730585_02625Unannotated protein. (222 aa)
GCA_000730585_02718Unannotated protein; Belongs to the LysR transcriptional regulatory family. (324 aa)
GCA_000730585_02766Unannotated protein. (195 aa)
GCA_000730585_02916Unannotated protein. (234 aa)
GCA_000730585_02961Unannotated protein. (241 aa)
csrA-2Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (65 aa)
GCA_000730585_03018Unannotated protein. (225 aa)
GCA_000730585_03041Unannotated protein. (326 aa)
csrA-3Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (62 aa)
GCA_000730585_03058Unannotated protein. (105 aa)
GCA_000730585_03119Unannotated protein. (491 aa)
GCA_000730585_05703Unannotated protein. (607 aa)
GCA_000730585_03128Unannotated protein. (100 aa)
GCA_000730585_03166Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (188 aa)
GCA_000730585_03231Unannotated protein. (237 aa)
GCA_000730585_03246Unannotated protein. (226 aa)
GCA_000730585_03253Unannotated protein. (394 aa)
GCA_000730585_03254Unannotated protein. (160 aa)
GCA_000730585_03329Unannotated protein. (214 aa)
GCA_000730585_03418Unannotated protein. (227 aa)
GCA_000730585_03671Unannotated protein. (472 aa)
GCA_000730585_03680Unannotated protein. (233 aa)
GCA_000730585_03684Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (181 aa)
GCA_000730585_03688Unannotated protein. (227 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)
GCA_000730585_03823Unannotated protein. (126 aa)
GCA_000730585_03932Unannotated protein. (227 aa)
GCA_000730585_04039Unannotated protein; Belongs to the LysR transcriptional regulatory family. (273 aa)
GCA_000730585_04172Unannotated protein. (223 aa)
GCA_000730585_04179Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
lepAUnannotated protein; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. (599 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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