STRINGSTRING
lexA-2 lexA-2 GCA_000730585_00082 GCA_000730585_00082 GCA_000730585_00101 GCA_000730585_00101 GCA_000730585_00157 GCA_000730585_00157 GCA_000730585_00183 GCA_000730585_00183 GCA_000730585_00271 GCA_000730585_00271 GCA_000730585_00292 GCA_000730585_00292 GCA_000730585_00372 GCA_000730585_00372 GCA_000730585_00405 GCA_000730585_00405 GCA_000730585_00458 GCA_000730585_00458 GCA_000730585_00467 GCA_000730585_00467 GCA_000730585_00472 GCA_000730585_00472 GCA_000730585_00489 GCA_000730585_00489 GCA_000730585_00502 GCA_000730585_00502 GCA_000730585_00529 GCA_000730585_00529 GCA_000730585_00675 GCA_000730585_00675 GCA_000730585_00769 GCA_000730585_00769 GCA_000730585_00785 GCA_000730585_00785 GCA_000730585_00787 GCA_000730585_00787 GCA_000730585_00819 GCA_000730585_00819 GCA_000730585_00837 GCA_000730585_00837 GCA_000730585_00852 GCA_000730585_00852 GCA_000730585_00944 GCA_000730585_00944 GCA_000730585_00952 GCA_000730585_00952 GCA_000730585_00956 GCA_000730585_00956 GCA_000730585_01043 GCA_000730585_01043 GCA_000730585_01122 GCA_000730585_01122 GCA_000730585_01222 GCA_000730585_01222 GCA_000730585_01234 GCA_000730585_01234 GCA_000730585_01244 GCA_000730585_01244 GCA_000730585_01261 GCA_000730585_01261 GCA_000730585_01284 GCA_000730585_01284 GCA_000730585_01308 GCA_000730585_01308 GCA_000730585_01322 GCA_000730585_01322 GCA_000730585_01351 GCA_000730585_01351 GCA_000730585_01403 GCA_000730585_01403 GCA_000730585_01457 GCA_000730585_01457 GCA_000730585_01463 GCA_000730585_01463 csrA csrA GCA_000730585_01502 GCA_000730585_01502 GCA_000730585_01511 GCA_000730585_01511 GCA_000730585_01548 GCA_000730585_01548 GCA_000730585_01549 GCA_000730585_01549 GCA_000730585_01573 GCA_000730585_01573 GCA_000730585_01837 GCA_000730585_01837 GCA_000730585_01857 GCA_000730585_01857 GCA_000730585_01911 GCA_000730585_01911 GCA_000730585_01974 GCA_000730585_01974 GCA_000730585_01995 GCA_000730585_01995 GCA_000730585_02000 GCA_000730585_02000 GCA_000730585_02044 GCA_000730585_02044 GCA_000730585_02112 GCA_000730585_02112 GCA_000730585_02308 GCA_000730585_02308 GCA_000730585_02347 GCA_000730585_02347 GCA_000730585_02408 GCA_000730585_02408 GCA_000730585_02453 GCA_000730585_02453 fur fur GCA_000730585_02492 GCA_000730585_02492 dksA dksA GCA_000730585_02547 GCA_000730585_02547 lexA lexA GCA_000730585_02612 GCA_000730585_02612 GCA_000730585_02613 GCA_000730585_02613 GCA_000730585_02621 GCA_000730585_02621 GCA_000730585_02691 GCA_000730585_02691 GCA_000730585_02766 GCA_000730585_02766 GCA_000730585_02816 GCA_000730585_02816 GCA_000730585_02831 GCA_000730585_02831 GCA_000730585_02862 GCA_000730585_02862 GCA_000730585_02903 GCA_000730585_02903 GCA_000730585_02916 GCA_000730585_02916 GCA_000730585_02932 GCA_000730585_02932 csrA-2 csrA-2 GCA_000730585_03041 GCA_000730585_03041 csrA-3 csrA-3 GCA_000730585_03058 GCA_000730585_03058 GCA_000730585_03081 GCA_000730585_03081 GCA_000730585_03119 GCA_000730585_03119 GCA_000730585_03130 GCA_000730585_03130 GCA_000730585_03176 GCA_000730585_03176 GCA_000730585_03229 GCA_000730585_03229 GCA_000730585_03231 GCA_000730585_03231 GCA_000730585_03329 GCA_000730585_03329 GCA_000730585_03411 GCA_000730585_03411 GCA_000730585_03430 GCA_000730585_03430 GCA_000730585_03432 GCA_000730585_03432 nrdR nrdR GCA_000730585_03538 GCA_000730585_03538 rsfS rsfS GCA_000730585_03624 GCA_000730585_03624 GCA_000730585_03766 GCA_000730585_03766 GCA_000730585_03823 GCA_000730585_03823 GCA_000730585_03832 GCA_000730585_03832 GCA_000730585_03848 GCA_000730585_03848 GCA_000730585_03943 GCA_000730585_03943 GCA_000730585_03951 GCA_000730585_03951 GCA_000730585_03967 GCA_000730585_03967 GCA_000730585_03978 GCA_000730585_03978 GCA_000730585_04179 GCA_000730585_04179 GCA_000730585_04180 GCA_000730585_04180 GCA_000730585_04206 GCA_000730585_04206 GCA_000730585_04327 GCA_000730585_04327 GCA_000730585_04577 GCA_000730585_04577 GCA_000730585_04601 GCA_000730585_04601 GCA_000730585_04620 GCA_000730585_04620 GCA_000730585_04649 GCA_000730585_04649 GCA_000730585_04666 GCA_000730585_04666 GCA_000730585_04717 GCA_000730585_04717 GCA_000730585_04719 GCA_000730585_04719 GCA_000730585_04861 GCA_000730585_04861 GCA_000730585_04919 GCA_000730585_04919 GCA_000730585_04967 GCA_000730585_04967 betI betI GCA_000730585_05013 GCA_000730585_05013 GCA_000730585_05084 GCA_000730585_05084 GCA_000730585_05161 GCA_000730585_05161 GCA_000730585_05408 GCA_000730585_05408 GCA_000730585_05419 GCA_000730585_05419 GCA_000730585_05433 GCA_000730585_05433 GCA_000730585_05454 GCA_000730585_05454 GCA_000730585_05459 GCA_000730585_05459 GCA_000730585_05479 GCA_000730585_05479 GCA_000730585_05485 GCA_000730585_05485 GCA_000730585_05511 GCA_000730585_05511 GCA_000730585_05694 GCA_000730585_05694
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
lexA-2Unannotated protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (203 aa)
GCA_000730585_00082Unannotated protein. (316 aa)
GCA_000730585_00101Unannotated protein. (147 aa)
GCA_000730585_00157Unannotated protein. (313 aa)
GCA_000730585_00183Unannotated protein. (377 aa)
GCA_000730585_00271Unannotated protein. (459 aa)
GCA_000730585_00292Unannotated protein. (399 aa)
GCA_000730585_00372Unannotated protein. (698 aa)
GCA_000730585_00405Unannotated protein. (320 aa)
GCA_000730585_00458Unannotated protein; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. (337 aa)
GCA_000730585_00467Unannotated protein. (219 aa)
GCA_000730585_00472Unannotated protein. (320 aa)
GCA_000730585_00489Unannotated protein. (317 aa)
GCA_000730585_00502Unannotated protein. (169 aa)
GCA_000730585_00529Unannotated protein. (386 aa)
GCA_000730585_00675Unannotated protein. (322 aa)
GCA_000730585_00769Unannotated protein. (311 aa)
GCA_000730585_00785Unannotated protein. (169 aa)
GCA_000730585_00787Unannotated protein. (206 aa)
GCA_000730585_00819Unannotated protein; Belongs to the BI1 family. (223 aa)
GCA_000730585_00837Unannotated protein. (317 aa)
GCA_000730585_00852Unannotated protein. (316 aa)
GCA_000730585_00944Unannotated protein. (303 aa)
GCA_000730585_00952Unannotated protein. (201 aa)
GCA_000730585_00956Unannotated protein. (317 aa)
GCA_000730585_01043Unannotated protein. (321 aa)
GCA_000730585_01122Unannotated protein. (200 aa)
GCA_000730585_01222Unannotated protein. (195 aa)
GCA_000730585_01234Unannotated protein. (98 aa)
GCA_000730585_01244Unannotated protein. (237 aa)
GCA_000730585_01261Unannotated protein. (323 aa)
GCA_000730585_01284Unannotated protein. (324 aa)
GCA_000730585_01308Unannotated protein. (538 aa)
GCA_000730585_01322Unannotated protein. (198 aa)
GCA_000730585_01351Unannotated protein. (317 aa)
GCA_000730585_01403Unannotated protein; Belongs to the DnaA family. HdA subfamily. (234 aa)
GCA_000730585_01457Unannotated protein. (237 aa)
GCA_000730585_01463Unannotated protein. (270 aa)
csrAUnannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (61 aa)
GCA_000730585_01502Unannotated protein; Belongs to the Fur family. (160 aa)
GCA_000730585_01511Unannotated protein. (687 aa)
GCA_000730585_01548Unannotated protein. (340 aa)
GCA_000730585_01549Unannotated protein; Belongs to the LysR transcriptional regulatory family. (304 aa)
GCA_000730585_01573Unannotated protein. (307 aa)
GCA_000730585_01837Unannotated protein. (214 aa)
GCA_000730585_01857Unannotated protein. (74 aa)
GCA_000730585_01911Unannotated protein. (207 aa)
GCA_000730585_01974Unannotated protein. (329 aa)
GCA_000730585_01995Unannotated protein. (312 aa)
GCA_000730585_02000Unannotated protein. (276 aa)
GCA_000730585_02044Unannotated protein. (316 aa)
GCA_000730585_02112Unannotated protein. (320 aa)
GCA_000730585_02308Unannotated protein. (228 aa)
GCA_000730585_02347Unannotated protein. (192 aa)
GCA_000730585_02408Unannotated protein. (117 aa)
GCA_000730585_02453Unannotated protein. (144 aa)
furUnannotated protein; Belongs to the Fur family. (134 aa)
GCA_000730585_02492Unannotated protein. (984 aa)
dksAUnannotated protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (148 aa)
GCA_000730585_02547Unannotated protein. (441 aa)
lexAUnannotated protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (205 aa)
GCA_000730585_02612Unannotated protein. (290 aa)
GCA_000730585_02613Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (200 aa)
GCA_000730585_02621Unannotated protein. (338 aa)
GCA_000730585_02691Unannotated protein. (157 aa)
GCA_000730585_02766Unannotated protein. (195 aa)
GCA_000730585_02816Unannotated protein. (219 aa)
GCA_000730585_02831Unannotated protein. (198 aa)
GCA_000730585_02862Unannotated protein. (324 aa)
GCA_000730585_02903Unannotated protein. (555 aa)
GCA_000730585_02916Unannotated protein. (234 aa)
GCA_000730585_02932Unannotated protein. (258 aa)
csrA-2Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (65 aa)
GCA_000730585_03041Unannotated protein. (326 aa)
csrA-3Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (62 aa)
GCA_000730585_03058Unannotated protein. (105 aa)
GCA_000730585_03081Unannotated protein. (105 aa)
GCA_000730585_03119Unannotated protein. (491 aa)
GCA_000730585_03130Unannotated protein. (115 aa)
GCA_000730585_03176Unannotated protein. (796 aa)
GCA_000730585_03229Unannotated protein; Component of the SOS system and an inhibitor of cell division. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. In the presence of GTP, binds a polymerization-competent form of FtsZ in a 1:1 ratio, thus inhibiting FtsZ polymerization and therefore preventing it from participating in the assembly of the Z ring. This mechanism prevents the premature segregation of damaged DNA to daughter cells during cell division. (157 aa)
GCA_000730585_03231Unannotated protein. (237 aa)
GCA_000730585_03329Unannotated protein. (214 aa)
GCA_000730585_03411Unannotated protein. (326 aa)
GCA_000730585_03430Unannotated protein. (315 aa)
GCA_000730585_03432Unannotated protein. (335 aa)
nrdRUnannotated protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (154 aa)
GCA_000730585_03538Unannotated protein. (218 aa)
rsfSUnannotated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (140 aa)
GCA_000730585_03624Unannotated protein. (202 aa)
GCA_000730585_03766Unannotated protein. (277 aa)
GCA_000730585_03823Unannotated protein. (126 aa)
GCA_000730585_03832Unannotated protein. (291 aa)
GCA_000730585_03848Unannotated protein. (210 aa)
GCA_000730585_03943Unannotated protein. (683 aa)
GCA_000730585_03951Unannotated protein. (100 aa)
GCA_000730585_03967Unannotated protein. (260 aa)
GCA_000730585_03978Unannotated protein. (313 aa)
GCA_000730585_04179Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
GCA_000730585_04180Unannotated protein. (197 aa)
GCA_000730585_04206Unannotated protein. (188 aa)
GCA_000730585_04327Unannotated protein. (153 aa)
GCA_000730585_04577Unannotated protein; Belongs to the ArsC family. (115 aa)
GCA_000730585_04601Unannotated protein. (211 aa)
GCA_000730585_04620Unannotated protein. (317 aa)
GCA_000730585_04649Unannotated protein. (206 aa)
GCA_000730585_04666Unannotated protein. (406 aa)
GCA_000730585_04717Unannotated protein. (319 aa)
GCA_000730585_04719Unannotated protein. (325 aa)
GCA_000730585_04861Unannotated protein; Plays a role in the regulation of phosphate uptake. (251 aa)
GCA_000730585_04919Unannotated protein. (258 aa)
GCA_000730585_04967Unannotated protein. (249 aa)
betIUnannotated protein; Repressor involved in choline regulation of the bet genes. (221 aa)
GCA_000730585_05013Unannotated protein; Antitoxin component of a type II toxin-antitoxin (TA) system. (78 aa)
GCA_000730585_05084Unannotated protein. (325 aa)
GCA_000730585_05161Unannotated protein. (321 aa)
GCA_000730585_05408Unannotated protein. (330 aa)
GCA_000730585_05419Unannotated protein. (213 aa)
GCA_000730585_05433Unannotated protein. (153 aa)
GCA_000730585_05454Unannotated protein. (306 aa)
GCA_000730585_05459Unannotated protein. (317 aa)
GCA_000730585_05479Unannotated protein. (324 aa)
GCA_000730585_05485Unannotated protein. (311 aa)
GCA_000730585_05511Unannotated protein. (504 aa)
GCA_000730585_05694Unannotated protein. (248 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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