STRINGSTRING
GCA_000730585_03130 GCA_000730585_03130 GCA_000730585_04855 GCA_000730585_04855 rpoS rpoS GCA_000730585_04179 GCA_000730585_04179
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000730585_03130Unannotated protein. (115 aa)
GCA_000730585_04855Unannotated protein. (229 aa)
rpoSUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (335 aa)
GCA_000730585_04179Unannotated protein; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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