STRINGSTRING
GCA_000730585_02492 GCA_000730585_02492 GCA_000730585_01389 GCA_000730585_01389 GCA_000730585_03058 GCA_000730585_03058 GCA_000730585_03119 GCA_000730585_03119 GCA_000730585_02766 GCA_000730585_02766 GCA_000730585_04039 GCA_000730585_04039 fliA fliA GCA_000730585_04845 GCA_000730585_04845 GCA_000730585_04919 GCA_000730585_04919
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000730585_02492Unannotated protein. (984 aa)
GCA_000730585_01389Unannotated protein. (917 aa)
GCA_000730585_03058Unannotated protein. (105 aa)
GCA_000730585_03119Unannotated protein. (491 aa)
GCA_000730585_02766Unannotated protein. (195 aa)
GCA_000730585_04039Unannotated protein; Belongs to the LysR transcriptional regulatory family. (273 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)
GCA_000730585_04845Unannotated protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
GCA_000730585_04919Unannotated protein. (258 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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