STRINGSTRING
GCA_000730585_00030 GCA_000730585_00030 GCA_000730585_00632 GCA_000730585_00632 GCA_000730585_01098 GCA_000730585_01098 GCA_000730585_02199 GCA_000730585_02199 GCA_000730585_02974 GCA_000730585_02974 GCA_000730585_03337 GCA_000730585_03337 GCA_000730585_03369 GCA_000730585_03369 GCA_000730585_03742 GCA_000730585_03742 GCA_000730585_03743 GCA_000730585_03743 GCA_000730585_03744 GCA_000730585_03744 GCA_000730585_03745 GCA_000730585_03745 GCA_000730585_03746 GCA_000730585_03746 rnc rnc GCA_000730585_04466 GCA_000730585_04466 tolB tolB GCA_000730585_04634 GCA_000730585_04634
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000730585_00030Unannotated protein. (267 aa)
GCA_000730585_00632Unannotated protein. (450 aa)
GCA_000730585_01098Unannotated protein. (244 aa)
GCA_000730585_02199Unannotated protein. (539 aa)
GCA_000730585_02974Unannotated protein. (279 aa)
GCA_000730585_03337Unannotated protein; Belongs to the ribulose-phosphate 3-epimerase family. (224 aa)
GCA_000730585_03369Unannotated protein. (527 aa)
GCA_000730585_03742Unannotated protein. (203 aa)
GCA_000730585_03743Unannotated protein. (782 aa)
GCA_000730585_03744Unannotated protein. (787 aa)
GCA_000730585_03745Unannotated protein. (780 aa)
GCA_000730585_03746Unannotated protein. (964 aa)
rncUnannotated protein; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (229 aa)
GCA_000730585_04466Unannotated protein. (468 aa)
tolBUnannotated protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (433 aa)
GCA_000730585_04634Unannotated protein. (525 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.