STRINGSTRING
GCA_000730585_05649 GCA_000730585_05649 GCA_000730585_00036 GCA_000730585_00036 GCA_000730585_00045 GCA_000730585_00045 GCA_000730585_00071 GCA_000730585_00071 GCA_000730585_00165 GCA_000730585_00165 GCA_000730585_00436 GCA_000730585_00436 GCA_000730585_00551 GCA_000730585_00551 GCA_000730585_00552 GCA_000730585_00552 GCA_000730585_00553 GCA_000730585_00553 GCA_000730585_00556 GCA_000730585_00556 GCA_000730585_00557 GCA_000730585_00557 GCA_000730585_00558 GCA_000730585_00558 GCA_000730585_00560 GCA_000730585_00560 GCA_000730585_00562 GCA_000730585_00562 GCA_000730585_00563 GCA_000730585_00563 GCA_000730585_00627 GCA_000730585_00627 GCA_000730585_00642 GCA_000730585_00642 GCA_000730585_00644 GCA_000730585_00644 GCA_000730585_00647 GCA_000730585_00647 GCA_000730585_00650 GCA_000730585_00650 GCA_000730585_00651 GCA_000730585_00651 GCA_000730585_00652 GCA_000730585_00652 GCA_000730585_00655 GCA_000730585_00655 GCA_000730585_00757 GCA_000730585_00757 GCA_000730585_00835 GCA_000730585_00835 GCA_000730585_00982 GCA_000730585_00982 GCA_000730585_01067 GCA_000730585_01067 GCA_000730585_01389 GCA_000730585_01389 csrA csrA GCA_000730585_01511 GCA_000730585_01511 GCA_000730585_05650 GCA_000730585_05650 GCA_000730585_01843 GCA_000730585_01843 GCA_000730585_02013 GCA_000730585_02013 GCA_000730585_02407 GCA_000730585_02407 GCA_000730585_02873 GCA_000730585_02873 GCA_000730585_02916 GCA_000730585_02916 csrA-2 csrA-2 csrA-3 csrA-3 GCA_000730585_03081 GCA_000730585_03081 GCA_000730585_03119 GCA_000730585_03119 GCA_000730585_03128 GCA_000730585_03128 GCA_000730585_03129 GCA_000730585_03129 GCA_000730585_03130 GCA_000730585_03130 GCA_000730585_03209 GCA_000730585_03209 GCA_000730585_03210 GCA_000730585_03210 GCA_000730585_03329 GCA_000730585_03329 GCA_000730585_03333 GCA_000730585_03333 trpE trpE GCA_000730585_03602 GCA_000730585_03602 GCA_000730585_03728 GCA_000730585_03728 fliA fliA GCA_000730585_03842 GCA_000730585_03842 GCA_000730585_03943 GCA_000730585_03943 GCA_000730585_03994 GCA_000730585_03994 GCA_000730585_04003 GCA_000730585_04003 GCA_000730585_04032 GCA_000730585_04032 GCA_000730585_04155 GCA_000730585_04155 GCA_000730585_04255 GCA_000730585_04255 GCA_000730585_04314 GCA_000730585_04314 GCA_000730585_04620 GCA_000730585_04620 GCA_000730585_04622 GCA_000730585_04622 GCA_000730585_04623 GCA_000730585_04623 GCA_000730585_04625 GCA_000730585_04625 GCA_000730585_04626 GCA_000730585_04626 GCA_000730585_05004 GCA_000730585_05004 cpdA cpdA GCA_000730585_05585 GCA_000730585_05585 GCA_000730585_05645 GCA_000730585_05645 GCA_000730585_05646 GCA_000730585_05646 GCA_000730585_05647 GCA_000730585_05647 GCA_000730585_05648 GCA_000730585_05648
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
GCA_000730585_05649Unannotated protein. (121 aa)
GCA_000730585_00036Unannotated protein. (287 aa)
GCA_000730585_00045Unannotated protein. (775 aa)
GCA_000730585_00071Unannotated protein. (841 aa)
GCA_000730585_00165Unannotated protein. (750 aa)
GCA_000730585_00436Unannotated protein. (694 aa)
GCA_000730585_00551Unannotated protein. (210 aa)
GCA_000730585_00552Unannotated protein; Belongs to the ClpA/ClpB family. (851 aa)
GCA_000730585_00553Unannotated protein. (354 aa)
GCA_000730585_00556Unannotated protein. (165 aa)
GCA_000730585_00557Unannotated protein. (497 aa)
GCA_000730585_00558Unannotated protein. (192 aa)
GCA_000730585_00560Unannotated protein. (446 aa)
GCA_000730585_00562Unannotated protein. (1269 aa)
GCA_000730585_00563Unannotated protein. (366 aa)
GCA_000730585_00627Unannotated protein. (521 aa)
GCA_000730585_00642Unannotated protein. (172 aa)
GCA_000730585_00644Unannotated protein. (445 aa)
GCA_000730585_00647Unannotated protein. (339 aa)
GCA_000730585_00650Unannotated protein. (493 aa)
GCA_000730585_00651Unannotated protein. (167 aa)
GCA_000730585_00652Unannotated protein; Belongs to the ClpA/ClpB family. (855 aa)
GCA_000730585_00655Unannotated protein. (1218 aa)
GCA_000730585_00757Unannotated protein; Belongs to the LysR transcriptional regulatory family. (307 aa)
GCA_000730585_00835Unannotated protein; Belongs to the LysR transcriptional regulatory family. (292 aa)
GCA_000730585_00982Unannotated protein. (364 aa)
GCA_000730585_01067Unannotated protein; Belongs to the sigma-70 factor family. (239 aa)
GCA_000730585_01389Unannotated protein. (917 aa)
csrAUnannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (61 aa)
GCA_000730585_01511Unannotated protein. (687 aa)
GCA_000730585_05650Unannotated protein. (136 aa)
GCA_000730585_01843Unannotated protein. (862 aa)
GCA_000730585_02013Unannotated protein. (157 aa)
GCA_000730585_02407Unannotated protein. (213 aa)
GCA_000730585_02873Unannotated protein. (463 aa)
GCA_000730585_02916Unannotated protein. (234 aa)
csrA-2Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (65 aa)
csrA-3Unannotated protein; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (62 aa)
GCA_000730585_03081Unannotated protein. (105 aa)
GCA_000730585_03119Unannotated protein. (491 aa)
GCA_000730585_03128Unannotated protein. (100 aa)
GCA_000730585_03129Unannotated protein. (567 aa)
GCA_000730585_03130Unannotated protein. (115 aa)
GCA_000730585_03209Unannotated protein. (412 aa)
GCA_000730585_03210Unannotated protein. (59 aa)
GCA_000730585_03329Unannotated protein. (214 aa)
GCA_000730585_03333Unannotated protein. (197 aa)
trpEUnannotated protein; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia. (492 aa)
GCA_000730585_03602Unannotated protein. (657 aa)
GCA_000730585_03728Unannotated protein. (638 aa)
fliAUnannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (246 aa)
GCA_000730585_03842Unannotated protein. (229 aa)
GCA_000730585_03943Unannotated protein. (683 aa)
GCA_000730585_03994Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family. (483 aa)
GCA_000730585_04003Unannotated protein. (388 aa)
GCA_000730585_04032Unannotated protein. (752 aa)
GCA_000730585_04155Unannotated protein. (294 aa)
GCA_000730585_04255Unannotated protein. (1098 aa)
GCA_000730585_04314Unannotated protein. (799 aa)
GCA_000730585_04620Unannotated protein. (317 aa)
GCA_000730585_04622Unannotated protein. (764 aa)
GCA_000730585_04623Unannotated protein. (219 aa)
GCA_000730585_04625Unannotated protein. (175 aa)
GCA_000730585_04626Unannotated protein. (540 aa)
GCA_000730585_05004Unannotated protein. (554 aa)
cpdAUnannotated protein; Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes. (270 aa)
GCA_000730585_05585Unannotated protein; Belongs to the LysR transcriptional regulatory family. (297 aa)
GCA_000730585_05645Unannotated protein. (151 aa)
GCA_000730585_05646Unannotated protein. (1762 aa)
GCA_000730585_05647Unannotated protein. (682 aa)
GCA_000730585_05648Unannotated protein. (179 aa)
Your Current Organism:
Pseudomonas japonica
NCBI taxonomy Id: 1215104
Other names: P. japonica NBRC 103040 = DSM 22348, Pseudomonas japonica DSM 22348, Pseudomonas japonica DSM 22348 = NBRC 103040, Pseudomonas japonica IAM 15071, Pseudomonas japonica JCM 21532, Pseudomonas japonica NBRC 103040, Pseudomonas japonica NBRC 103040 = DSM 22348
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