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ccoP ccoP ccoN ccoN gltA gltA RK21_00907 RK21_00907 sdhD sdhD sdhB sdhB CMV24_07535 CMV24_07535 sucC sucC sucD sucD ubiE ubiE mdh mdh cyoD cyoD GCA_000688275_01625 GCA_000688275_01625 RK21_01533 RK21_01533 acnB acnB RK21_03111 RK21_03111 CMV24_15380 CMV24_15380 RK21_05190 RK21_05190 ctaD ctaD CMV24_25300 CMV24_25300 glcB glcB RK21_03318 RK21_03318 RK21_04975 RK21_04975 CMV24_20270 CMV24_20270 fumC fumC RK21_03446 RK21_03446 fumC-2 fumC-2 CMV24_15955 CMV24_15955 RK21_00978 RK21_00978 nuoH nuoH nuoI nuoI nuoK nuoK CMV24_15885 CMV24_15885 CMV24_15880 CMV24_15880 nuoN nuoN cydB cydB RK21_00036 RK21_00036 GCA_000688275_04669 GCA_000688275_04669 GCA_000688275_04684 GCA_000688275_04684 CMV24_16405 CMV24_16405 CMV24_16410 CMV24_16410 RK21_04134 RK21_04134 cyoB cyoB RK21_04136 RK21_04136 mqo-2 mqo-2 mqo mqo ppc ppc aceK aceK ccoP-2 ccoP-2 ccoN-2 ccoN-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ccoPUnannotated protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (311 aa)
ccoNUnannotated protein; Belongs to the heme-copper respiratory oxidase family. (474 aa)
gltAUnannotated protein; Belongs to the citrate synthase family. (429 aa)
RK21_00907Unannotated protein. (128 aa)
sdhDUnannotated protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). (122 aa)
sdhBUnannotated protein. (234 aa)
CMV24_07535Unannotated protein. (943 aa)
sucCUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (388 aa)
sucDUnannotated protein; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (294 aa)
ubiEUnannotated protein; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (256 aa)
mdhUnannotated protein; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (312 aa)
cyoDUnannotated protein. (110 aa)
GCA_000688275_01625Unannotated protein. (252 aa)
RK21_01533Unannotated protein. (270 aa)
acnBUnannotated protein; Belongs to the aconitase/IPM isomerase family. (697 aa)
RK21_03111Unannotated protein. (885 aa)
CMV24_15380Unannotated protein; Belongs to the citrate synthase family. (375 aa)
RK21_05190Unannotated protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (375 aa)
ctaDUnannotated protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (529 aa)
CMV24_25300Unannotated protein. (295 aa)
glcBUnannotated protein; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily. (725 aa)
RK21_03318Unannotated protein; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (913 aa)
RK21_04975Unannotated protein. (485 aa)
CMV24_20270Unannotated protein. (559 aa)
fumCUnannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (464 aa)
RK21_03446Unannotated protein. (254 aa)
fumC-2Unannotated protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (458 aa)
CMV24_15955Unannotated protein. (441 aa)
RK21_00978Unannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (904 aa)
nuoHUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (335 aa)
nuoIUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (182 aa)
nuoKUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
CMV24_15885Unannotated protein. (617 aa)
CMV24_15880Unannotated protein. (510 aa)
nuoNUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (489 aa)
cydBUnannotated protein. (335 aa)
RK21_00036Unannotated protein. (478 aa)
GCA_000688275_04669Unannotated protein. (614 aa)
GCA_000688275_04684Unannotated protein. (169 aa)
CMV24_16405Unannotated protein; Belongs to the monomeric-type IDH family. (741 aa)
CMV24_16410Unannotated protein. (418 aa)
RK21_04134Unannotated protein. (207 aa)
cyoBUnannotated protein; Belongs to the heme-copper respiratory oxidase family. (672 aa)
RK21_04136Unannotated protein. (314 aa)
mqo-2Unannotated protein. (501 aa)
mqoUnannotated protein. (545 aa)
ppcUnannotated protein; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle; Belongs to the PEPCase type 1 family. (875 aa)
aceKUnannotated protein; Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation. (569 aa)
ccoP-2Unannotated protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (325 aa)
ccoN-2Unannotated protein; Belongs to the heme-copper respiratory oxidase family. (480 aa)
Your Current Organism:
Pseudomonas plecoglossicida
NCBI taxonomy Id: 1215115
Other names: P. plecoglossicida NBRC 103162 = DSM 15088, Pseudomonas plecoglossicida DSM 15088, Pseudomonas plecoglossicida DSM 15088 = NBRC 103162, Pseudomonas plecoglossicida NBRC 103162, Pseudomonas plecoglossicida NBRC 103162 = DSM 15088
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