(14 nodes) Mixed, incl. Methylmalonyl-CoA mutase, and Citrate lyase beta subunit-like network (Pannonibacter phragmitetus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV26835.1	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (296 aa)
	ALV26987.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (350 aa)
	ALV29938.1	crotonyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	ALV29940.1	Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	ALV27059.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	ALV27672.1	2-methylcitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
	ALV27700.1	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (397 aa)
	ALV28326.1	ArgK protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	ALV30187.1	methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
	ALV28782.1	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. (348 aa)
	ALV29555.1	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (392 aa)
	ALV29655.1	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology. (721 aa)
	ALV30348.1	methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
	ALV29697.1	Arginine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Your Current Organism:

Pannonibacter phragmitetus

NCBI taxonomy Id: 121719
Other names: Achromobacter group B, Achromobacter group E, Achromobacter sp. LMG 5410, Achromobacter sp. LMG 5411, Achromobacter sp. LMG 5430, Achromobacter sp. LMG 5431, DSM 14782, LMG 22736, LMG:22736, NCAIM B02025, NCTC 13350, P. phragmitetus, Pannonibacter phragmitetus Borsodi et al. 2003, alpha proteobacterium C6-19, alpha proteobacterium C6/17, alpha proteobacterium C6/8, strain C6/19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV26835.1	ALV26987.1	APZ00_06850	APZ00_07775	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703
ALV26835.1	ALV27672.1	APZ00_06850	APZ00_11860	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	2-methylcitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.617
ALV26835.1	ALV27700.1	APZ00_06850	APZ00_12030	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.	0.624
ALV26835.1	ALV29555.1	APZ00_06850	APZ00_22985	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.	0.821
ALV26835.1	ALV29655.1	APZ00_06850	APZ00_23575	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
ALV26835.1	ALV29938.1	APZ00_06850	APZ00_07795	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	crotonyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.560
ALV26835.1	ALV29940.1	APZ00_06850	APZ00_07820	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
ALV26987.1	ALV26835.1	APZ00_07775	APZ00_06850	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.703
ALV26987.1	ALV27059.1	APZ00_07775	APZ00_08230	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
ALV26987.1	ALV28782.1	APZ00_07775	APZ00_18415	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.985
ALV26987.1	ALV29938.1	APZ00_07775	APZ00_07795	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	crotonyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
ALV26987.1	ALV29940.1	APZ00_07775	APZ00_07820	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.867
ALV27059.1	ALV26987.1	APZ00_08230	APZ00_07775	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
ALV27059.1	ALV28782.1	APZ00_08230	APZ00_18415	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.680
ALV27059.1	ALV29938.1	APZ00_08230	APZ00_07795	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	crotonyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
ALV27059.1	ALV29940.1	APZ00_08230	APZ00_07820	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.971
ALV27672.1	ALV26835.1	APZ00_11860	APZ00_06850	2-methylcitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.617
ALV27672.1	ALV28782.1	APZ00_11860	APZ00_18415	2-methylcitrate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.541
ALV27700.1	ALV26835.1	APZ00_12030	APZ00_06850	CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family.	malyl-CoA thiolesterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family.	0.624
ALV28326.1	ALV29655.1	APZ00_15685	APZ00_23575	ArgK protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997

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