(42 nodes) Mixed, incl. Purine nucleobase metabolic process, and Branched-chain amino acid transport system / permease component network (Pannonibacter phragmitetus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALV26219.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
	ALV26220.1	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (517 aa)
	ALV26221.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (371 aa)
	ALV26222.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (322 aa)
	ALV26245.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa)
	ALV26246.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	ALV26247.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (787 aa)
	ALV26248.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
	ALV26632.1	XdhC/CoxI family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	ALV26633.1	XdhC/CoxF family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	ALV26634.1	4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (541 aa)
	ALV29886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)
	ALV27000.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
	ALV27001.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
	ALV27002.1	Twin-arginine translocation pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (731 aa)
	ALV27003.1	Isoquinoline 1-oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	ALV27004.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	ALV27170.1	8-oxoguanine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	ALV27171.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)
	ALV27788.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (315 aa)
	ALV27789.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (349 aa)
	ALV27790.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	ALV27791.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ALV28171.1	Carbon monoxide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	ALV28254.1	Allantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
	ALV28312.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)
	ALV28313.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	ALV28449.1	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (440 aa)
	ALV30179.1	Ureidoglycolate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (162 aa)
	ALV28577.1	(S)-ureidoglycine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	ALV28754.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ALV30207.1	Pyrimidine utilization regulatory protein R; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	ALV30227.1	OHCU decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	ALV28841.1	Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
	ALV28842.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	ALV28843.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (304 aa)
	ALV28844.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (364 aa)
	ALV30228.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (519 aa)
	ALV28845.1	Xanthine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	ALV28846.1	Aldehyde oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	ALV28847.1	FAD-binding molybdopterin dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
	pucM	5-hydroxyisourate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (116 aa)

Your Current Organism:

Pannonibacter phragmitetus

NCBI taxonomy Id: 121719
Other names: Achromobacter group B, Achromobacter group E, Achromobacter sp. LMG 5410, Achromobacter sp. LMG 5411, Achromobacter sp. LMG 5430, Achromobacter sp. LMG 5431, DSM 14782, LMG 22736, LMG:22736, NCAIM B02025, NCTC 13350, P. phragmitetus, Pannonibacter phragmitetus Borsodi et al. 2003, alpha proteobacterium C6-19, alpha proteobacterium C6/17, alpha proteobacterium C6/8, strain C6/19

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALV26219.1	ALV26220.1	APZ00_03330	APZ00_03335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ALV26219.1	ALV26221.1	APZ00_03330	APZ00_03340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.988
ALV26219.1	ALV26222.1	APZ00_03330	APZ00_03345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.983
ALV26219.1	ALV27788.1	APZ00_03330	APZ00_12540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.965
ALV26219.1	ALV27789.1	APZ00_03330	APZ00_12545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.964
ALV26219.1	ALV27790.1	APZ00_03330	APZ00_12550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
ALV26219.1	ALV27791.1	APZ00_03330	APZ00_12555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
ALV26219.1	ALV28842.1	APZ00_03330	APZ00_18795	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ALV26219.1	ALV28843.1	APZ00_03330	APZ00_18800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.967
ALV26219.1	ALV28844.1	APZ00_03330	APZ00_18805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.965
ALV26219.1	ALV30228.1	APZ00_03330	APZ00_18810	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
ALV26220.1	ALV26219.1	APZ00_03335	APZ00_03330	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
ALV26220.1	ALV26221.1	APZ00_03335	APZ00_03340	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.996
ALV26220.1	ALV26222.1	APZ00_03335	APZ00_03345	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.995
ALV26220.1	ALV27788.1	APZ00_03335	APZ00_12540	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.983
ALV26220.1	ALV27789.1	APZ00_03335	APZ00_12545	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.985
ALV26220.1	ALV27790.1	APZ00_03335	APZ00_12550	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
ALV26220.1	ALV27791.1	APZ00_03335	APZ00_12555	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
ALV26220.1	ALV28842.1	APZ00_03335	APZ00_18795	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
ALV26220.1	ALV28843.1	APZ00_03335	APZ00_18800	Heme ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.	0.984

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