STRINGSTRING
ALV29696.1 ALV29696.1 ALV27651.1 ALV27651.1 ALV27652.1 ALV27652.1 ALV27654.1 ALV27654.1 ALV27665.1 ALV27665.1 ALV30052.1 ALV30052.1 ALV27736.1 ALV27736.1 ALV27738.1 ALV27738.1 ALV27801.1 ALV27801.1 rhaM rhaM ALV27852.1 ALV27852.1 ALV27874.1 ALV27874.1 ALV30075.1 ALV30075.1 mtnA mtnA ALV27920.1 ALV27920.1 ALV27983.1 ALV27983.1 pgi pgi ALV28183.1 ALV28183.1 murI murI ALV28472.1 ALV28472.1 fucU fucU nnrD nnrD tig tig ALV30187.1 ALV30187.1 ALV28708.1 ALV28708.1 tpiA tpiA queA queA ALV28813.1 ALV28813.1 ALV30218.1 ALV30218.1 gyrA gyrA ALV28858.1 ALV28858.1 parE parE alr alr ALV30243.1 ALV30243.1 ALV27645.1 ALV27645.1 ALV27618.1 ALV27618.1 ALV27582.1 ALV27582.1 ALV27565.1 ALV27565.1 groEL-2 groEL-2 ALV27348.1 ALV27348.1 ALV27346.1 ALV27346.1 ALV27340.1 ALV27340.1 ALV27337.1 ALV27337.1 ALV27324.1 ALV27324.1 ALV27296.1 ALV27296.1 glmM glmM purE purE ALV29983.1 ALV29983.1 ALV27211.1 ALV27211.1 ALV27164.1 ALV27164.1 ALV25705.1 ALV25705.1 ALV25719.1 ALV25719.1 apaG apaG ALV25774.1 ALV25774.1 pchB pchB ALV29776.1 ALV29776.1 groEL groEL ALV26116.1 ALV26116.1 truA truA deoB deoB ALV26233.1 ALV26233.1 ALV26234.1 ALV26234.1 ALV29851.1 ALV29851.1 uxaC uxaC kduI kduI ALV26420.1 ALV26420.1 hisA hisA cobH cobH gpmA gpmA truB truB ALV26690.1 ALV26690.1 ALV26692.1 ALV26692.1 gyrB gyrB trpF trpF fabA fabA ALV26801.1 ALV26801.1 dapF dapF ALV26881.1 ALV26881.1 ALV26934.1 ALV26934.1 ALV29940.1 ALV29940.1 ALV27070.1 ALV27070.1 xylA xylA ALV30248.1 ALV30248.1 ALV28961.1 ALV28961.1 topA topA ALV30299.1 ALV30299.1 parC parC ALV29467.1 ALV29467.1 rpiA rpiA ALV29503.1 ALV29503.1 ALV30326.1 ALV30326.1 ALV29655.1 ALV29655.1 ALV30348.1 ALV30348.1 ALV29714.1 ALV29714.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ALV29696.1Tat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (450 aa)
ALV27651.1Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
ALV27652.1Copper resistance protein CopZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
ALV27654.1Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
ALV27665.13-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (645 aa)
ALV30052.1Muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (391 aa)
ALV27736.1Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the hyi family. (254 aa)
ALV27738.1Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/glutamate racemases family. (242 aa)
ALV27801.1Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
rhaML-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose. (104 aa)
ALV27852.13-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)
ALV27874.1Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (231 aa)
ALV30075.1Hydrogenase accessory protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HupG/HyaE family. (143 aa)
mtnAMethylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (366 aa)
ALV27920.1RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (951 aa)
ALV27983.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
pgiGlucose-6-phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GPI family. (532 aa)
ALV28183.1Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
murIGlutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis. (262 aa)
ALV28472.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
fucURibose ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family. (144 aa)
nnrDNAD(P)H-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of bot [...] (513 aa)
tigTrigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. (454 aa)
ALV30187.1methylmalonyl-CoA epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (134 aa)
ALV28708.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (631 aa)
tpiATriosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. (254 aa)
queAS-adenosylmethionine:tRNA ribosyltransferase-isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (372 aa)
ALV28813.1Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (156 aa)
ALV30218.1Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (160 aa)
gyrADNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (936 aa)
ALV28858.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)
parEDNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (702 aa)
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (392 aa)
ALV30243.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
ALV27645.1NnrU family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (231 aa)
ALV27618.1D-tagatose 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
ALV27582.1Tautomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 4-oxalocrotonate tautomerase family. (71 aa)
ALV27565.1D-tagatose 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
groEL-2Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (544 aa)
ALV27348.15-deoxy-glucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
ALV27346.1Myo-inosose-2 dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
ALV27340.1RpiR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
ALV27337.1AP endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
ALV27324.1Ribulose phosphate epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribulose-phosphate 3-epimerase family. (228 aa)
ALV27296.1RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (341 aa)
glmMPhosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family. (447 aa)
purEN5-carboxyaminoimidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). (165 aa)
ALV29983.1RNA pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
ALV27211.1KpsF/GutQ family protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SIS family. GutQ/KpsF subfamily. (338 aa)
ALV27164.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
ALV25705.1Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
ALV25719.13-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (739 aa)
apaGCo2+/Mg2+ efflux protein ApaG; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
ALV25774.1Asp/Glu/hydantoin racemase; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
pchBChorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)
ALV29776.1UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NAD(P)-dependent epimerase/dehydratase family. (319 aa)
groELMolecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (546 aa)
ALV26116.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
truAPseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (271 aa)
deoBPhosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (408 aa)
ALV26233.1Phosphoglucomutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
ALV26234.1Aldose epimerase; Converts alpha-aldose to the beta-anomer. (334 aa)
ALV29851.1Isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (363 aa)
uxaCGlucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
kduI5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (274 aa)
ALV26420.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (125 aa)
hisACatalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-hosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
cobHCatalyzes the interconversion of precorrin-8X and hydrogenobyrinate; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa)
gpmAPhosphoglyceromutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (206 aa)
truBPseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (311 aa)
ALV26690.1UDP-N-acetyl glucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (364 aa)
ALV26692.1Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
gyrBDNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (817 aa)
trpFN-(5'-phosphoribosyl)anthranilate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TrpF family. (219 aa)
fabA3-hydroxydecanoyl-ACP dehydratase; Necessary for the introduction of cis unsaturation into fatty acids. Catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to E- (2)-decenoyl-ACP and then its isomerization to Z-(3)-decenoyl-ACP. Can catalyze the dehydratase reaction for beta-hydroxyacyl-ACPs with saturated chain lengths up to 16:0, being most active on intermediate chain length. (168 aa)
ALV26801.1Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (112 aa)
dapFDiaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. (306 aa)
ALV26881.1Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
ALV26934.1Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
ALV29940.1Protein meaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
ALV27070.1Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
xylAXylose isomerase; Catalyzes the interconversion of D-xylose to D-xylulose; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the xylose isomerase family. (438 aa)
ALV30248.1Polysaccharide biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
ALV28961.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (917 aa)
ALV30299.1RNA pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (333 aa)
parCDNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (749 aa)
ALV29467.1Fumarate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (446 aa)
rpiARibose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. (230 aa)
ALV29503.1UDP-N-acetyl glucosamine 2-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa)
ALV30326.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (393 aa)
ALV29655.1methylmalonyl-CoA mutase; MDM; functions in conversion of succinate to propionate; Derived by automated computational analysis using gene prediction method: Protein Homology. (721 aa)
ALV30348.1methylmalonyl-CoA mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (662 aa)
ALV29714.116S rRNA pseudouridine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pseudouridine synthase RsuA family. (234 aa)
Your Current Organism:
Pannonibacter phragmitetus
NCBI taxonomy Id: 121719
Other names: Achromobacter group B, Achromobacter group E, Achromobacter sp. LMG 5410, Achromobacter sp. LMG 5411, Achromobacter sp. LMG 5430, Achromobacter sp. LMG 5431, DSM 14782, LMG 22736, LMG:22736, NCAIM B02025, NCTC 13350, P. phragmitetus, Pannonibacter phragmitetus Borsodi et al. 2003, alpha proteobacterium C6-19, alpha proteobacterium C6/17, alpha proteobacterium C6/8, strain C6/19
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