Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALV25665.1 | ALV28285.1 | APZ00_00060 | APZ00_15430 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Hydroxyacid aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. | 0.648 |
| ALV25665.1 | ALV29819.1 | APZ00_00060 | APZ00_02540 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. | 0.648 |
| ALV25708.1 | pnp | APZ00_00310 | APZ00_05015 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.949 |
| ALV25708.1 | rph | APZ00_00310 | APZ00_04635 | DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.524 |
| ALV25983.1 | ALV29736.1 | APZ00_01900 | APZ00_24055 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. | 0.532 |
| ALV26091.1 | ALV27551.1 | APZ00_02530 | APZ00_11145 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.473 |
| ALV26091.1 | ALV27555.1 | APZ00_02530 | APZ00_11165 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.471 |
| ALV26091.1 | ALV27727.1 | APZ00_02530 | APZ00_12195 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hydroxyquinol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.912 |
| ALV26091.1 | ALV28692.1 | APZ00_02530 | APZ00_17865 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Rieske (2Fe-2S) protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.410 |
| ALV26091.1 | ALV29466.1 | APZ00_02530 | APZ00_22490 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Protocatechuate 3,4-dioxygenase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.544 |
| ALV26091.1 | ALV29467.1 | APZ00_02530 | APZ00_22495 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Fumarate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.579 |
| ALV26091.1 | ALV29818.1 | APZ00_02530 | APZ00_02535 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 2-oxo-hepta-3-ene-1,7-dioate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.790 |
| ALV26091.1 | ALV29819.1 | APZ00_02530 | APZ00_02540 | Catechol 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 4-hydroxy-2-oxo-heptane-1,7-dioate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the HpcH/HpaI aldolase family. | 0.631 |
| ALV26223.1 | ALV26225.1 | APZ00_03350 | APZ00_03360 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | 0.942 |
| ALV26223.1 | ALV26228.1 | APZ00_03350 | APZ00_03375 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Adenosine deaminase; Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism. | 0.657 |
| ALV26223.1 | ALV29256.1 | APZ00_03350 | APZ00_21210 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Serine/threonine protein phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. | 0.926 |
| ALV26223.1 | ALV29736.1 | APZ00_03350 | APZ00_24055 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. | 0.935 |
| ALV26223.1 | deoB | APZ00_03350 | APZ00_03370 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. | 0.928 |
| ALV26223.1 | surE | APZ00_03350 | APZ00_18960 | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Stationary phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. | 0.916 |
| ALV26225.1 | ALV26223.1 | APZ00_03360 | APZ00_03350 | 2-deoxyribose-5-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate. | Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.942 |
page 1 of 14