13 items (Diaphorina citri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103516088	Guanine nucleotide exchange factor MSS4. (169 aa)
	LOC103524331	Brain tumor protein. (813 aa)
	LOC103519816	CLIP-associating protein 2-like. (1141 aa)
	LOC113471759	CLIP-associating protein 1-A-like. (300 aa)
	LOC113469307	Heterogeneous nuclear ribonucleoprotein R-like. (151 aa)
	LOC103512500	Double-stranded RNA-binding protein Staufen homolog. (510 aa)
	LOC103505849	LOW QUALITY PROTEIN: homeobox protein prospero. (1249 aa)
	LOC103505704	Uncharacterized protein LOC103505704. (259 aa)
	LOC103524911	LOW QUALITY PROTEIN: myosin-11-like. (1330 aa)
	LOC108254253	CLIP-associating protein-like. (243 aa)
	LOC103518621	CLIP-associating protein-like. (188 aa)
	LOC103521724	Pleckstrin homology-like domain family B member 1 isoform X1. (151 aa)
	LOC103505586	Abl interactor 2. (447 aa)

Your Current Organism:

Diaphorina citri

NCBI taxonomy Id: 121845
Other names: Asian citrus psyllid, D. citri

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103505586	LOC103516088	A0A1S3CUM4	A0A1S3DCS9	Abl interactor 2.	Guanine nucleotide exchange factor MSS4.	0.447
LOC103505704	LOC103512500	A0A3Q0IKR9	A0A3Q0IZW8	Uncharacterized protein LOC103505704.	Double-stranded RNA-binding protein Staufen homolog.	0.555
LOC103512500	LOC103505704	A0A3Q0IZW8	A0A3Q0IKR9	Double-stranded RNA-binding protein Staufen homolog.	Uncharacterized protein LOC103505704.	0.555
LOC103512500	LOC103524331	A0A3Q0IZW8	A0A3Q0JLM8	Double-stranded RNA-binding protein Staufen homolog.	Brain tumor protein.	0.518
LOC103516088	LOC103505586	A0A1S3DCS9	A0A1S3CUM4	Guanine nucleotide exchange factor MSS4.	Abl interactor 2.	0.447
LOC103524331	LOC103512500	A0A3Q0JLM8	A0A3Q0IZW8	Brain tumor protein.	Double-stranded RNA-binding protein Staufen homolog.	0.518
LOC108254253	LOC113471759	A0A1S4ERF3	A0A3Q0JEW7	CLIP-associating protein-like.	CLIP-associating protein 1-A-like.	0.545
LOC113471759	LOC108254253	A0A3Q0JEW7	A0A1S4ERF3	CLIP-associating protein 1-A-like.	CLIP-associating protein-like.	0.545