STRINGSTRING
ftsH ftsH CRM82_05795 CRM82_05795 CRM82_05780 CRM82_05780 CRM82_05755 CRM82_05755 CRM82_05670 CRM82_05670 kdpB kdpB uvrA-2 uvrA-2 CRM82_07405 CRM82_07405 CRM82_07410 CRM82_07410 GCA_001515545_03114 GCA_001515545_03114 ychF ychF CRM82_07755 CRM82_07755 CRM82_08160 CRM82_08160 CRM82_03560 CRM82_03560 minD minD uvrA uvrA hslU hslU clpB clpB GCA_001515545_01860 GCA_001515545_01860 GCA_001515545_01859 GCA_001515545_01859 CRM82_10330 CRM82_10330 CRM82_10935 CRM82_10935 CRM82_10990 CRM82_10990 uvrB uvrB hscA hscA smc smc CRM82_12805 CRM82_12805 CRM82_13150 CRM82_13150 CRM82_18195 CRM82_18195 CRM82_17495 CRM82_17495 clpX clpX lon lon mfd mfd CRM82_16535 CRM82_16535 CRM82_16455 CRM82_16455 CRM82_14050 CRM82_14050 clpA clpA fliI-2 fliI-2 fliI fliI rep rep CRM82_01505 CRM82_01505 recG recG htpG htpG ruvA ruvA ruvB ruvB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ftsHUnannotated protein; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (640 aa)
CRM82_05795Unannotated protein. (965 aa)
CRM82_05780Unannotated protein; Belongs to the heat shock protein 70 family. (658 aa)
CRM82_05755Unannotated protein. (829 aa)
CRM82_05670Unannotated protein. (386 aa)
kdpBUnannotated protein; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (696 aa)
uvrA-2Unannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1979 aa)
CRM82_07405Unannotated protein. (164 aa)
CRM82_07410Unannotated protein. (434 aa)
GCA_001515545_03114Unannotated protein. (386 aa)
ychFUnannotated protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (364 aa)
CRM82_07755Unannotated protein. (280 aa)
CRM82_08160Unannotated protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (363 aa)
CRM82_03560Unannotated protein. (593 aa)
minDUnannotated protein. (270 aa)
uvrAUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1003 aa)
hslUUnannotated protein; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (439 aa)
clpBUnannotated protein; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (871 aa)
GCA_001515545_01860Unannotated protein. (511 aa)
GCA_001515545_01859Unannotated protein. (131 aa)
CRM82_10330Unannotated protein. (814 aa)
CRM82_10935Unannotated protein. (333 aa)
CRM82_10990Unannotated protein. (901 aa)
uvrBUnannotated protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the [...] (685 aa)
hscAUnannotated protein; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. (622 aa)
smcUnannotated protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1174 aa)
CRM82_12805Unannotated protein. (516 aa)
CRM82_13150Unannotated protein. (339 aa)
CRM82_18195Unannotated protein; Belongs to the DEAD box helicase family. (478 aa)
CRM82_17495Unannotated protein. (187 aa)
clpXUnannotated protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (420 aa)
lonUnannotated protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (813 aa)
mfdUnannotated protein; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1163 aa)
CRM82_16535Unannotated protein. (553 aa)
CRM82_16455Unannotated protein. (700 aa)
CRM82_14050Unannotated protein. (366 aa)
clpAUnannotated protein; Belongs to the ClpA/ClpB family. (779 aa)
fliI-2Unannotated protein. (449 aa)
fliIUnannotated protein. (469 aa)
repUnannotated protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (688 aa)
CRM82_01505Unannotated protein. (436 aa)
recGUnannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (687 aa)
htpGUnannotated protein; Molecular chaperone. Has ATPase activity. (647 aa)
ruvAUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (193 aa)
ruvBUnannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (338 aa)
Your Current Organism:
Comamonas terrigena
NCBI taxonomy Id: 1219032
Other names: C. terrigena NBRC 13299, Comamonas terrigena NBRC 13299
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