(7 nodes) Organellar small ribosomal subunit network (Trichosporon asahii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A1Q2_05422	Ribosomal protein. (343 aa)
	A1Q2_07692	Ribosomal protein. (456 aa)
	A1Q2_04851	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family. (345 aa)
	A1Q2_02983	Uncharacterized protein. (240 aa)
	A1Q2_07821	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (555 aa)
	A1Q2_06370	Structural constituent of ribosome. (212 aa)
	A1Q2_00449	MRP-S28 domain-containing protein. (344 aa)

Your Current Organism:

Trichosporon asahii

NCBI taxonomy Id: 1220162
Other names: T. asahii var. asahii CBS 8904, Trichosporon asahii var. asahii CBS 8904

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1Q2_00449	A1Q2_02983	K1WWY5	K1W189	MRP-S28 domain-containing protein.	Uncharacterized protein.	0.999
A1Q2_00449	A1Q2_04851	K1WWY5	K1VJ83	MRP-S28 domain-containing protein.	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	0.999
A1Q2_00449	A1Q2_05422	K1WWY5	K1V8F7	MRP-S28 domain-containing protein.	Ribosomal protein.	0.999
A1Q2_00449	A1Q2_06370	K1WWY5	K1WCS2	MRP-S28 domain-containing protein.	Structural constituent of ribosome.	0.999
A1Q2_00449	A1Q2_07692	K1WWY5	K1VAQ9	MRP-S28 domain-containing protein.	Ribosomal protein.	0.999
A1Q2_00449	A1Q2_07821	K1WWY5	K1W843	MRP-S28 domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A1Q2_02983	A1Q2_00449	K1W189	K1WWY5	Uncharacterized protein.	MRP-S28 domain-containing protein.	0.999
A1Q2_02983	A1Q2_04851	K1W189	K1VJ83	Uncharacterized protein.	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	0.999
A1Q2_02983	A1Q2_05422	K1W189	K1V8F7	Uncharacterized protein.	Ribosomal protein.	0.999
A1Q2_02983	A1Q2_06370	K1W189	K1WCS2	Uncharacterized protein.	Structural constituent of ribosome.	0.999
A1Q2_02983	A1Q2_07692	K1W189	K1VAQ9	Uncharacterized protein.	Ribosomal protein.	0.999
A1Q2_02983	A1Q2_07821	K1W189	K1W843	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A1Q2_04851	A1Q2_00449	K1VJ83	K1WWY5	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	MRP-S28 domain-containing protein.	0.999
A1Q2_04851	A1Q2_02983	K1VJ83	K1W189	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.999
A1Q2_04851	A1Q2_05422	K1VJ83	K1V8F7	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein.	0.999
A1Q2_04851	A1Q2_06370	K1VJ83	K1WCS2	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	Structural constituent of ribosome.	0.999
A1Q2_04851	A1Q2_07692	K1VJ83	K1VAQ9	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	Ribosomal protein.	0.999
A1Q2_04851	A1Q2_07821	K1VJ83	K1W843	30s ribosomal protein s5; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A1Q2_05422	A1Q2_00449	K1V8F7	K1WWY5	Ribosomal protein.	MRP-S28 domain-containing protein.	0.999
A1Q2_05422	A1Q2_02983	K1V8F7	K1W189	Ribosomal protein.	Uncharacterized protein.	0.999