(33 nodes) Base excision repair network (Trichosporon asahii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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protein homology

Your Input:
	A1Q2_02058	Poly [ADP-ribose] polymerase. (1121 aa)
	A1Q2_01208	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (2211 aa)
	A1Q2_02190	5' flap endonuclease. (640 aa)
	A1Q2_01001	CBFD_NFYB_HMF domain-containing protein. (300 aa)
	A1Q2_01835	Uncharacterized protein. (127 aa)
	A1Q2_01900	Epsilon DNA polymerase. (579 aa)
	A1Q2_00511	Uncharacterized protein. (896 aa)
	A1Q2_03179	Uncharacterized protein. (414 aa)
	A1Q2_02572	Uncharacterized protein. (333 aa)
	A1Q2_02269	Uncharacterized protein. (1150 aa)
	A1Q2_01979	Uncharacterized protein. (172 aa)
	A1Q2_01692	DNA ligase. (813 aa)
	A1Q2_01432	tRNA specific adenosine deaminase. (240 aa)
	A1Q2_07599	CBFD_NFYB_HMF domain-containing protein. (140 aa)
	A1Q2_01307	Endonuclease IV. (678 aa)
	A1Q2_06815	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (312 aa)
	A1Q2_06211	DNA ligase. (727 aa)
	A1Q2_06115	Uncharacterized protein. (373 aa)
	A1Q2_05489	Uncharacterized protein. (195 aa)
	A1Q2_05233	DNA-3-methyladenine glycosidase. (492 aa)
	A1Q2_01674	DNA polymerase delta, small subunit. (617 aa)
	A1Q2_01459	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (115 aa)
	A1Q2_06318	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family. (635 aa)
	UNG1	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (275 aa)
	A1Q2_06065	FPG_CAT domain-containing protein. (376 aa)
	A1Q2_03528	BRCT domain-containing protein. (919 aa)
	FEN1	Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...] (344 aa)
	A1Q2_07064	DNA-(Apurinic or apyrimidinic site) lyase. (433 aa)
	A1Q2_06801	Chaperone. (401 aa)
	A1Q2_02638	Adenine DNA glycosylase; Adenine glycosylase active on G-A mispairs. (510 aa)
	A1Q2_02253	Uncharacterized protein. (603 aa)
	A1Q2_04228	DNA-(Apurinic or apyrimidinic site) lyase. (403 aa)
	A1Q2_01151	DNA polymerase. (912 aa)

Your Current Organism:

Trichosporon asahii

NCBI taxonomy Id: 1220162
Other names: T. asahii var. asahii CBS 8904, Trichosporon asahii var. asahii CBS 8904

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1Q2_00511	A1Q2_01151	K1VXM2	K1WUN7	Uncharacterized protein.	DNA polymerase.	0.683
A1Q2_00511	A1Q2_01208	K1VXM2	K1VVE5	Uncharacterized protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.692
A1Q2_00511	A1Q2_01674	K1VXM2	K1VIP2	Uncharacterized protein.	DNA polymerase delta, small subunit.	0.819
A1Q2_00511	A1Q2_01692	K1VXM2	K1W525	Uncharacterized protein.	DNA ligase.	0.676
A1Q2_00511	A1Q2_01900	K1VXM2	K1VWN9	Uncharacterized protein.	Epsilon DNA polymerase.	0.674
A1Q2_00511	A1Q2_02058	K1VXM2	K1VSZ6	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.591
A1Q2_00511	A1Q2_02269	K1VXM2	K1W3G2	Uncharacterized protein.	Uncharacterized protein.	0.591
A1Q2_00511	A1Q2_03528	K1VXM2	K1VNI0	Uncharacterized protein.	BRCT domain-containing protein.	0.659
A1Q2_00511	A1Q2_04228	K1VXM2	K1WJ80	Uncharacterized protein.	DNA-(Apurinic or apyrimidinic site) lyase.	0.410
A1Q2_00511	A1Q2_06065	K1VXM2	K1VKE7	Uncharacterized protein.	FPG_CAT domain-containing protein.	0.545
A1Q2_00511	A1Q2_06211	K1VXM2	K1V638	Uncharacterized protein.	DNA ligase.	0.676
A1Q2_00511	A1Q2_06318	K1VXM2	K1VJL2	Uncharacterized protein.	DNA-(apurinic or apyrimidinic site) lyase; Belongs to the DNA repair enzymes AP/ExoA family.	0.719
A1Q2_00511	A1Q2_06815	K1VXM2	K1V4D3	Uncharacterized protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.897
A1Q2_00511	A1Q2_07599	K1VXM2	K1W8U5	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.627
A1Q2_01001	A1Q2_01208	K1VW21	K1VVE5	CBFD_NFYB_HMF domain-containing protein.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.790
A1Q2_01001	A1Q2_01900	K1VW21	K1VWN9	CBFD_NFYB_HMF domain-containing protein.	Epsilon DNA polymerase.	0.747
A1Q2_01001	A1Q2_07599	K1VW21	K1W8U5	CBFD_NFYB_HMF domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.982
A1Q2_01151	A1Q2_00511	K1WUN7	K1VXM2	DNA polymerase.	Uncharacterized protein.	0.683
A1Q2_01151	A1Q2_01208	K1WUN7	K1VVE5	DNA polymerase.	DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.	0.983
A1Q2_01151	A1Q2_01674	K1WUN7	K1VIP2	DNA polymerase.	DNA polymerase delta, small subunit.	0.999