(65 nodes) Mismatch repair network (Trichosporon asahii)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	A1Q2_07867	DNA replication factor. (197 aa)
	A1Q2_06815	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (312 aa)
	A1Q2_06211	DNA ligase. (727 aa)
	A1Q2_06115	Uncharacterized protein. (373 aa)
	A1Q2_05594	Retrotransposon nucleocapsid protein. (822 aa)
	A1Q2_08482	Retrotransposon nucleocapsid protein. (1790 aa)
	A1Q2_04808	Integrase catalytic domain-containing protein. (1720 aa)
	A1Q2_07546	RPA_C domain-containing protein. (236 aa)
	A1Q2_07466	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (591 aa)
	A1Q2_07379	Uncharacterized protein. (127 aa)
	A1Q2_03795	Retroelement pol polyprotein-like protein. (1070 aa)
	A1Q2_03502	AAA domain-containing protein. (918 aa)
	A1Q2_03186	Uncharacterized protein. (147 aa)
	A1Q2_05850	Meiotic recombination-related protein. (838 aa)
	A1Q2_05590	Retrotransposon nucleocapsid protein. (1662 aa)
	A1Q2_05489	Uncharacterized protein. (195 aa)
	A1Q2_02108	Uncharacterized protein. (404 aa)
	A1Q2_01674	DNA polymerase delta, small subunit. (617 aa)
	A1Q2_05114	Uncharacterized protein. (872 aa)
	A1Q2_06520	DNA replication factor (Activator 1 subunit). (389 aa)
	A1Q2_04856	Zds_C domain-containing protein. (1502 aa)
	A1Q2_01459	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (115 aa)
	A1Q2_01396	Retrotransposon nucleocapsid protein. (1687 aa)
	A1Q2_06157	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (987 aa)
	A1Q2_05591	Reverse transcriptase domain-containing protein. (313 aa)
	A1Q2_05626	Uncharacterized protein. (1229 aa)
	A1Q2_04072	Replication factor C subunit 1. (955 aa)
	A1Q2_00541	Uncharacterized protein. (432 aa)
	A1Q2_07598	Uncharacterized protein. (799 aa)
	A1Q2_07266	Uncharacterized protein. (153 aa)
	A1Q2_03148	Putative retrotransposon nucleocapsid protein. (1796 aa)
	A1Q2_05953	Uncharacterized protein. (601 aa)
	A1Q2_02372	Retrotransposon nucleocapsid protein. (1175 aa)
	A1Q2_02285	Gag-pol polyprotein. (2539 aa)
	A1Q2_04652	Retrotransposable element Tf2 protein type 1-like protein. (571 aa)
	A1Q2_02038	Uncharacterized protein. (504 aa)
	A1Q2_00885	DNA clamp loader. (325 aa)
	A1Q2_01494	Subunit of heteropentameric Replication factor C (RF-C), Rfc3p. (335 aa)
	A1Q2_01015	Nuclear mRNA splicing protein. (317 aa)
	A1Q2_03394	Polyprotein. (1322 aa)
	A1Q2_03179	Uncharacterized protein. (414 aa)
	A1Q2_00348	CCHC-type domain-containing protein. (660 aa)
	A1Q2_00253	Uncharacterized protein. (364 aa)
	A1Q2_02943	Exonuclease. (323 aa)
	A1Q2_02491	DNA mismatch repair protein MSH2. (672 aa)
	A1Q2_01979	Uncharacterized protein. (172 aa)
	A1Q2_01692	DNA ligase. (813 aa)
	A1Q2_01472	Postmeiotic segregation increased 2. (950 aa)
	A1Q2_00544	Uncharacterized protein. (188 aa)
	A1Q2_00317	Uncharacterized protein. (167 aa)
	A1Q2_07297	Chromo domain-containing protein. (737 aa)
	A1Q2_00254	Uncharacterized protein. (230 aa)
	A1Q2_07215	Uncharacterized protein. (551 aa)
	A1Q2_06488	Uncharacterized protein. (1000 aa)
	A1Q2_06047	Polyprotein, putative. (1642 aa)
	A1Q2_05593	Gag,protease,endonuclease, reverse transcriptase,RNaseH. (344 aa)
	A1Q2_03976	Retrotransposon nucleocapsid protein. (1789 aa)
	A1Q2_03234	MUTL-like protein 1. (478 aa)
	A1Q2_02492	DNA mismatch repair protein MSH2. (242 aa)
	A1Q2_01501	Uncharacterized protein. (743 aa)
	A1Q2_01293	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1161 aa)
	A1Q2_01151	DNA polymerase. (912 aa)
	A1Q2_01017	Exonuclease domain-containing protein. (361 aa)
	A1Q2_00883	DNA clamp loader. (201 aa)
	A1Q2_00008	Putative retrotransposon nucleocapsid protein. (1367 aa)

Your Current Organism:

Trichosporon asahii

NCBI taxonomy Id: 1220162
Other names: T. asahii var. asahii CBS 8904, Trichosporon asahii var. asahii CBS 8904

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A1Q2_00008	A1Q2_00541	K1WYI3	K1VM16	Putative retrotransposon nucleocapsid protein.	Uncharacterized protein.	0.624
A1Q2_00008	A1Q2_07466	K1WYI3	K1VBR7	Putative retrotransposon nucleocapsid protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.660
A1Q2_00008	A1Q2_07546	K1WYI3	K1VBJ5	Putative retrotransposon nucleocapsid protein.	RPA_C domain-containing protein.	0.682
A1Q2_00317	A1Q2_00541	K1W958	K1VM16	Uncharacterized protein.	Uncharacterized protein.	0.624
A1Q2_00317	A1Q2_03394	K1W958	K1VZV0	Uncharacterized protein.	Polyprotein.	0.406
A1Q2_00317	A1Q2_07466	K1W958	K1VBR7	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.648
A1Q2_00317	A1Q2_07546	K1W958	K1VBJ5	Uncharacterized protein.	RPA_C domain-containing protein.	0.666
A1Q2_00348	A1Q2_00541	K1W0K8	K1VM16	CCHC-type domain-containing protein.	Uncharacterized protein.	0.624
A1Q2_00348	A1Q2_07466	K1W0K8	K1VBR7	CCHC-type domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.648
A1Q2_00348	A1Q2_07546	K1W0K8	K1VBJ5	CCHC-type domain-containing protein.	RPA_C domain-containing protein.	0.666
A1Q2_00541	A1Q2_00008	K1VM16	K1WYI3	Uncharacterized protein.	Putative retrotransposon nucleocapsid protein.	0.624
A1Q2_00541	A1Q2_00317	K1VM16	K1W958	Uncharacterized protein.	Uncharacterized protein.	0.624
A1Q2_00541	A1Q2_00348	K1VM16	K1W0K8	Uncharacterized protein.	CCHC-type domain-containing protein.	0.624
A1Q2_00541	A1Q2_00883	K1VM16	K1WVF8	Uncharacterized protein.	DNA clamp loader.	0.786
A1Q2_00541	A1Q2_00885	K1VM16	K1VW93	Uncharacterized protein.	DNA clamp loader.	0.786
A1Q2_00541	A1Q2_01015	K1VM16	K1VYS9	Uncharacterized protein.	Nuclear mRNA splicing protein.	0.730
A1Q2_00541	A1Q2_01151	K1VM16	K1WUN7	Uncharacterized protein.	DNA polymerase.	0.760
A1Q2_00541	A1Q2_01293	K1VM16	K1WU28	Uncharacterized protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.851
A1Q2_00541	A1Q2_01396	K1VM16	K1VJP7	Uncharacterized protein.	Retrotransposon nucleocapsid protein.	0.624
A1Q2_00541	A1Q2_01494	K1VM16	K1VXI6	Uncharacterized protein.	Subunit of heteropentameric Replication factor C (RF-C), Rfc3p.	0.827