(28 nodes) Ubiquitin-conjugating enzyme/RWD-like network (Cyphellophora europaea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W2RWY2_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (244 aa)
	W2RKR9_9EURO	RWD domain-containing protein. (235 aa)
	W2RKJ6_9EURO	Uncharacterized protein. (447 aa)
	W2RJS3_9EURO	RBR-type E3 ubiquitin transferase. (700 aa)
	W2RJB7_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1136 aa)
	W2RIE0_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (139 aa)
	W2RVV8_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (262 aa)
	W2RVS9_9EURO	Uncharacterized protein. (1522 aa)
	W2RUZ0_9EURO	Ubiquitin-conjugating enzyme E2 8; Belongs to the ubiquitin-conjugating enzyme family. (184 aa)
	W2RUH8_9EURO	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (150 aa)
	W2RLD5_9EURO	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	W2SDC5_9EURO	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family. (157 aa)
	W2S302_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (709 aa)
	W2S3E3_9EURO	RWD domain-containing protein. (283 aa)
	W2RKY0_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (184 aa)
	W2S3X4_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (182 aa)
	W2S5Y6_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (248 aa)
	W2S6F0_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (161 aa)
	W2S253_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (277 aa)
	W2S6L0_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (194 aa)
	W2S6U5_9EURO	Uncharacterized protein. (528 aa)
	W2S9D9_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	W2S1N2_9EURO	Uncharacterized protein. (1386 aa)
	W2S0A0_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (1205 aa)
	W2RZQ4_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (186 aa)
	W2RZ96_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (169 aa)
	W2RYT7_9EURO	UBIQUITIN_CONJUGAT_2 domain-containing protein. (382 aa)
	W2RWZ1_9EURO	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family. (151 aa)

Your Current Organism:

Cyphellophora europaea

NCBI taxonomy Id: 1220924
Other names: C. europaea CBS 101466, Cyphellophora europaea CBS 101466, Phialophora europaea CBS 101466

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W2RIE0_9EURO	W2RJB7_9EURO	W2RIE0	W2RJB7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.853
W2RIE0_9EURO	W2RKJ6_9EURO	W2RIE0	W2RKJ6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.832
W2RIE0_9EURO	W2RKY0_9EURO	W2RIE0	W2RKY0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.905
W2RIE0_9EURO	W2RLD5_9EURO	W2RIE0	W2RLD5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2-16 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.958
W2RIE0_9EURO	W2RUH8_9EURO	W2RIE0	W2RUH8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.999
W2RIE0_9EURO	W2RUZ0_9EURO	W2RIE0	W2RUZ0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 8; Belongs to the ubiquitin-conjugating enzyme family.	0.796
W2RIE0_9EURO	W2RVV8_9EURO	W2RIE0	W2RVV8	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.862
W2RIE0_9EURO	W2RWY2_9EURO	W2RIE0	W2RWY2	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.933
W2RIE0_9EURO	W2RWZ1_9EURO	W2RIE0	W2RWZ1	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.	0.917
W2RIE0_9EURO	W2RYT7_9EURO	W2RIE0	W2RYT7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.863
W2RIE0_9EURO	W2RZ96_9EURO	W2RIE0	W2RZ96	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.858
W2RIE0_9EURO	W2RZQ4_9EURO	W2RIE0	W2RZQ4	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.783
W2RIE0_9EURO	W2S0A0_9EURO	W2RIE0	W2S0A0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.648
W2RIE0_9EURO	W2S253_9EURO	W2RIE0	W2S253	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.793
W2RIE0_9EURO	W2S302_9EURO	W2RIE0	W2S302	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.888
W2RIE0_9EURO	W2S3X4_9EURO	W2RIE0	W2S3X4	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.862
W2RIE0_9EURO	W2S6F0_9EURO	W2RIE0	W2S6F0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.931
W2RIE0_9EURO	W2S6L0_9EURO	W2RIE0	W2S6L0	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.958
W2RIE0_9EURO	W2S9D9_9EURO	W2RIE0	W2S9D9	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.746
W2RIE0_9EURO	W2SDC5_9EURO	W2RIE0	W2SDC5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SUMO-conjugating enzyme ubc9; Belongs to the ubiquitin-conjugating enzyme family.	0.898