24 items (Cyphellophora europaea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W2RKX9_9EURO	DNA-directed RNA polymerase. (195 aa)
	W2RIX2_9EURO	Uncharacterized protein. (66 aa)
	W2RM86_9EURO	Uncharacterized protein. (153 aa)
	W2RLS6_9EURO	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1224 aa)
	W2RL14_9EURO	Uncharacterized protein. (527 aa)
	W2SEL6_9EURO	Uncharacterized protein. (80 aa)
	W2SED1_9EURO	Uncharacterized protein. (993 aa)
	W2SDM1_9EURO	Uncharacterized protein. (464 aa)
	W2SDF7_9EURO	ENDO3c domain-containing protein. (386 aa)
	W2SBN4_9EURO	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1597 aa)
	W2S9Y4_9EURO	Myb_DNA-bind_7 domain-containing protein. (653 aa)
	W2S9V1_9EURO	TFIIS-type domain-containing protein. (110 aa)
	W2S8D2_9EURO	Uncharacterized protein. (237 aa)
	W2S725_9EURO	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (551 aa)
	W2S6D2_9EURO	Uncharacterized protein. (822 aa)
	W2S5N9_9EURO	Uncharacterized protein. (1169 aa)
	W2S145_9EURO	B-block_TFIIIC domain-containing protein. (1991 aa)
	W2S0V9_9EURO	Uncharacterized protein. (418 aa)
	W2RZR1_9EURO	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (144 aa)
	W2RY71_9EURO	TATA-box-binding protein. (256 aa)
	W2RWM4_9EURO	Uncharacterized protein. (338 aa)
	W2RSK4_9EURO	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs. (280 aa)
	W2RS50_9EURO	BTB domain-containing protein. (926 aa)
	W2RKY2_9EURO	RPOLD domain-containing protein. (365 aa)

Your Current Organism:

Cyphellophora europaea

NCBI taxonomy Id: 1220924
Other names: C. europaea CBS 101466, Cyphellophora europaea CBS 101466, Phialophora europaea CBS 101466

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W2RIX2_9EURO	W2RKX9_9EURO	W2RIX2	W2RKX9	Uncharacterized protein.	DNA-directed RNA polymerase.	0.997
W2RIX2_9EURO	W2RKY2_9EURO	W2RIX2	W2RKY2	Uncharacterized protein.	RPOLD domain-containing protein.	0.999
W2RIX2_9EURO	W2RL14_9EURO	W2RIX2	W2RL14	Uncharacterized protein.	Uncharacterized protein.	0.677
W2RIX2_9EURO	W2RLS6_9EURO	W2RIX2	W2RLS6	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
W2RIX2_9EURO	W2RM86_9EURO	W2RIX2	W2RM86	Uncharacterized protein.	Uncharacterized protein.	0.999
W2RIX2_9EURO	W2RS50_9EURO	W2RIX2	W2RS50	Uncharacterized protein.	BTB domain-containing protein.	0.944
W2RIX2_9EURO	W2RSK4_9EURO	W2RIX2	W2RSK4	Uncharacterized protein.	DNA-directed RNA polymerase III subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs.	0.944
W2RIX2_9EURO	W2RWM4_9EURO	W2RIX2	W2RWM4	Uncharacterized protein.	Uncharacterized protein.	0.943
W2RIX2_9EURO	W2RY71_9EURO	W2RIX2	W2RY71	Uncharacterized protein.	TATA-box-binding protein.	0.970
W2RIX2_9EURO	W2RZR1_9EURO	W2RIX2	W2RZR1	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
W2RIX2_9EURO	W2S0V9_9EURO	W2RIX2	W2S0V9	Uncharacterized protein.	Uncharacterized protein.	0.985
W2RIX2_9EURO	W2S145_9EURO	W2RIX2	W2S145	Uncharacterized protein.	B-block_TFIIIC domain-containing protein.	0.602
W2RIX2_9EURO	W2S5N9_9EURO	W2RIX2	W2S5N9	Uncharacterized protein.	Uncharacterized protein.	0.757
W2RIX2_9EURO	W2S725_9EURO	W2RIX2	W2S725	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.980
W2RIX2_9EURO	W2S8D2_9EURO	W2RIX2	W2S8D2	Uncharacterized protein.	Uncharacterized protein.	0.999
W2RIX2_9EURO	W2S9V1_9EURO	W2RIX2	W2S9V1	Uncharacterized protein.	TFIIS-type domain-containing protein.	0.999
W2RIX2_9EURO	W2S9Y4_9EURO	W2RIX2	W2S9Y4	Uncharacterized protein.	Myb_DNA-bind_7 domain-containing protein.	0.886
W2RIX2_9EURO	W2SBN4_9EURO	W2RIX2	W2SBN4	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
W2RIX2_9EURO	W2SDM1_9EURO	W2RIX2	W2SDM1	Uncharacterized protein.	Uncharacterized protein.	0.981
W2RIX2_9EURO	W2SED1_9EURO	W2RIX2	W2SED1	Uncharacterized protein.	Uncharacterized protein.	0.965