(76 nodes) Nickel cation transmembrane transporter activity, and Oligopeptide/dipeptide ABC transporter, C-terminal network (Bradyrhizobium sp. CCGELA001)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMA55643.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (596 aa)
	AMA55644.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	AMA55645.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AMA55646.1	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (331 aa)
	AMA55647.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (322 aa)
	AMA56689.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (525 aa)
	AMA56690.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	AMA56691.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
	AMA56692.1	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (562 aa)
	AMA56968.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	AMA56969.1	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AMA56970.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AMA56971.1	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (330 aa)
	AMA56972.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (323 aa)
	AMA57046.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	AMA57048.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (329 aa)
	AMA57049.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (328 aa)
	AMA57050.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AMA61228.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AMA57051.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	AMA57354.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
	AMA57355.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AMA57356.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (337 aa)
	AMA57357.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (336 aa)
	AMA61254.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
	AMA57397.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AMA57398.1	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AMA57399.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	AMA57400.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (329 aa)
	AMA57401.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (330 aa)
	AMA58224.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)
	AMA58225.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	AMA58226.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (328 aa)
	oppD	Oligopeptide transporter ATP-binding component; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (327 aa)
	AMA61349.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (545 aa)
	AMA58228.1	Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)
	AMA58999.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	AMA59000.1	Carboxypeptidase; Catalyzes the release of C-terminal glutamate residues from N-acylating moieties; Derived by automated computational analysis using gene prediction method: Protein Homology. (376 aa)
	AMA59001.1	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	AMA59002.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
	AMA59003.1	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (549 aa)
	AMA59004.1	Microcystin degradation protein MlrC; Involved in peptidolytic degradation of cyclic heptapeptide hepatotoxin microcystin (MC); Belongs to the peptidase M81 family. (501 aa)
	AMA59005.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	AMA59959.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)
	AMA59960.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AMA59961.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (332 aa)
	oppD-2	Oligopeptide transporter ATP-binding component; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (328 aa)
	AMA61561.1	Oligopeptide ABC transpoter oligopeptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (527 aa)
	AMA60196.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (568 aa)
	AMA60197.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AMA60198.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (320 aa)
	AMA61590.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	AMA60517.1	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (545 aa)
	AMA60518.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AMA60519.1	Microcin ABC transporter permease; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	AMA61639.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
	AMA60520.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	dppD	DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AMA60628.1	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (352 aa)
	AMA60629.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	AMA60630.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	AMA60631.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	AMA60632.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	AMA60654.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	AMA60655.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)
	AMA60656.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	AMA61656.1	Microcin ABC transporter ATP-binding protein; With YejAEF is involved in resistance to microcin C; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (539 aa)
	AMA60807.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (591 aa)
	AMA60808.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	AMA60809.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	AMA60810.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (540 aa)
	AMA60845.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (532 aa)
	AMA60846.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	AMA60847.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	AMA60848.1	Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (335 aa)
	AMA60849.1	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (328 aa)

Your Current Organism:

Bradyrhizobium sp. CCGELA001

NCBI taxonomy Id: 1223566
Other names: B. sp. CCGE-LA001, Bradyrhizobium sp. CCGE-LA001

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA55643.1	AMA55644.1	BCCGELA001_04735	BCCGELA001_04740	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
AMA55643.1	AMA55645.1	BCCGELA001_04735	BCCGELA001_04745	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
AMA55643.1	AMA55646.1	BCCGELA001_04735	BCCGELA001_04750	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.749
AMA55643.1	AMA55647.1	BCCGELA001_04735	BCCGELA001_04755	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.769
AMA55643.1	AMA56689.1	BCCGELA001_04735	BCCGELA001_10780	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
AMA55643.1	AMA56690.1	BCCGELA001_04735	BCCGELA001_10785	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
AMA55643.1	AMA56691.1	BCCGELA001_04735	BCCGELA001_10790	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AMA55643.1	AMA56968.1	BCCGELA001_04735	BCCGELA001_12420	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
AMA55643.1	AMA56969.1	BCCGELA001_04735	BCCGELA001_12425	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AMA55643.1	AMA56970.1	BCCGELA001_04735	BCCGELA001_12430	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
AMA55643.1	AMA57050.1	BCCGELA001_04735	BCCGELA001_12870	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AMA55643.1	AMA57354.1	BCCGELA001_04735	BCCGELA001_14530	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
AMA55643.1	AMA57355.1	BCCGELA001_04735	BCCGELA001_14535	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
AMA55643.1	AMA57398.1	BCCGELA001_04735	BCCGELA001_14780	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
AMA55643.1	AMA57399.1	BCCGELA001_04735	BCCGELA001_14785	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
AMA55643.1	AMA58224.1	BCCGELA001_04735	BCCGELA001_19435	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
AMA55643.1	AMA58225.1	BCCGELA001_04735	BCCGELA001_19440	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
AMA55643.1	AMA58999.1	BCCGELA001_04735	BCCGELA001_23810	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.413
AMA55643.1	AMA59001.1	BCCGELA001_04735	BCCGELA001_23820	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
AMA55643.1	AMA59002.1	BCCGELA001_04735	BCCGELA001_23825	Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.469