(20 nodes) Mixed, incl. Serralysin-like metalloprotease, C-terminal, and Type I secretion membrane fusion protein, HlyD family network (Bradyrhizobium sp. CCGELA001)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AMA54997.1	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology. (826 aa)
	AMA56021.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (80 aa)
	AMA56022.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (418 aa)
	AMA56576.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1017 aa)
	AMA61180.1	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AMA61181.1	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (438 aa)
	AMA61185.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (692 aa)
	AMA61186.1	Type I secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa)
	AMA56738.1	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (437 aa)
	AMA57711.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (544 aa)
	AMA57903.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (165 aa)
	AMA61477.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)
	AMA60032.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (487 aa)
	AMA60163.1	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family. (448 aa)
	AMA60164.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (75 aa)
	AMA60527.1	Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	AMA61640.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	AMA60622.1	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AMA60623.1	Type I secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AMA60634.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (1805 aa)

Your Current Organism:

Bradyrhizobium sp. CCGELA001

NCBI taxonomy Id: 1223566
Other names: B. sp. CCGE-LA001, Bradyrhizobium sp. CCGE-LA001

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMA54997.1	AMA56576.1	BCCGELA001_01065	BCCGELA001_10140	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.665
AMA54997.1	AMA57903.1	BCCGELA001_01065	BCCGELA001_17590	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.830
AMA54997.1	AMA60032.1	BCCGELA001_01065	BCCGELA001_29880	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.665
AMA54997.1	AMA60163.1	BCCGELA001_01065	BCCGELA001_30660	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.442
AMA54997.1	AMA61640.1	BCCGELA001_01065	BCCGELA001_32840	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AMA56021.1	AMA56022.1	BCCGELA001_06930	BCCGELA001_06935	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
AMA56022.1	AMA56021.1	BCCGELA001_06935	BCCGELA001_06930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.503
AMA56022.1	AMA60163.1	BCCGELA001_06935	BCCGELA001_30660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.408
AMA56022.1	AMA60634.1	BCCGELA001_06935	BCCGELA001_33445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.764
AMA56022.1	AMA61180.1	BCCGELA001_06935	BCCGELA001_10970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AMA56576.1	AMA54997.1	BCCGELA001_10140	BCCGELA001_01065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
AMA56576.1	AMA60163.1	BCCGELA001_10140	BCCGELA001_30660	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.430
AMA56576.1	AMA60634.1	BCCGELA001_10140	BCCGELA001_33445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.506
AMA56576.1	AMA61180.1	BCCGELA001_10140	BCCGELA001_10970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
AMA56738.1	AMA57711.1	BCCGELA001_11075	BCCGELA001_16525	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.624
AMA56738.1	AMA60623.1	BCCGELA001_11075	BCCGELA001_33390	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AMA56738.1	AMA61180.1	BCCGELA001_11075	BCCGELA001_10970	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C39; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
AMA56738.1	AMA61185.1	BCCGELA001_11075	BCCGELA001_11065	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.554
AMA56738.1	AMA61186.1	BCCGELA001_11075	BCCGELA001_11070	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type I secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
AMA57711.1	AMA56738.1	BCCGELA001_16525	BCCGELA001_11075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hemolysin secretion protein D; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624