STRINGSTRING
SFP91707.1 SFP91707.1 ruvC ruvC SFP75781.1 SFP75781.1 SFP79030.1 SFP79030.1 SFP79513.1 SFP79513.1 SFP79678.1 SFP79678.1 xerC xerC ruvA ruvA radA radA SFQ27577.1 SFQ27577.1 SFQ29760.1 SFQ29760.1 SFQ35706.1 SFQ35706.1 SFQ37354.1 SFQ37354.1 recG recG SFQ40140.1 SFQ40140.1 SFQ47654.1 SFQ47654.1 SFQ48439.1 SFQ48439.1 SFQ49008.1 SFQ49008.1 SFQ49285.1 SFQ49285.1 SFQ49505.1 SFQ49505.1 SFQ50673.1 SFQ50673.1 SFQ52452.1 SFQ52452.1 SFQ52610.1 SFQ52610.1 SFQ52880.1 SFQ52880.1 SFQ53792.1 SFQ53792.1 recO recO SFQ58451.1 SFQ58451.1 SFQ60505.1 SFQ60505.1 SFQ64788.1 SFQ64788.1 SFQ66348.1 SFQ66348.1 SFQ78763.1 SFQ78763.1 SFQ78889.1 SFQ78889.1 SFQ79478.1 SFQ79478.1 SFQ79487.1 SFQ79487.1 SFQ79565.1 SFQ79565.1 SFQ79615.1 SFQ79615.1 SFQ79681.1 SFQ79681.1 SFQ79711.1 SFQ79711.1 SFQ79756.1 SFQ79756.1 SFQ79982.1 SFQ79982.1 SFQ80047.1 SFQ80047.1 SFQ80176.1 SFQ80176.1 SFQ80188.1 SFQ80188.1 SFQ81291.1 SFQ81291.1 SFQ81341.1 SFQ81341.1 SFQ81358.1 SFQ81358.1 SFQ81450.1 SFQ81450.1 SFQ82087.1 SFQ82087.1 SFQ82091.1 SFQ82091.1 SFQ82175.1 SFQ82175.1 SFQ82375.1 SFQ82375.1 SFQ82394.1 SFQ82394.1 SFQ82634.1 SFQ82634.1 SFQ83012.1 SFQ83012.1 SFQ83016.1 SFQ83016.1 SFQ83361.1 SFQ83361.1 SFQ83572.1 SFQ83572.1 SFQ83779.1 SFQ83779.1 SFQ01449.1 SFQ01449.1 recR recR ruvB ruvB recA recA xerC-2 xerC-2 SFQ23933.1 SFQ23933.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SFP91707.1Helix-turn-helix domain-containing protein. (140 aa)
ruvCHolliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (213 aa)
SFP75781.1PD-(D/E)XK nuclease superfamily protein. (997 aa)
SFP79030.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (461 aa)
SFP79513.1Plasmid recombination enzyme. (448 aa)
SFP79678.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (406 aa)
xerCIntegrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (299 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa)
radADNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (465 aa)
SFQ27577.1Transposase. (265 aa)
SFQ29760.1Exonuclease RecJ. (579 aa)
SFQ35706.1REP element-mobilizing transposase RayT. (176 aa)
SFQ37354.1ATP-dependent DNA helicase RecQ. (734 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (698 aa)
SFQ40140.1DNA-binding protein HU-beta; Belongs to the bacterial histone-like protein family. (102 aa)
SFQ47654.1DNA replication and repair protein RecN; May be involved in recombinational repair of damaged DNA. (558 aa)
SFQ48439.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (419 aa)
SFQ49008.1Transposase. (100 aa)
SFQ49285.1Hypothetical protein. (172 aa)
SFQ49505.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (410 aa)
SFQ50673.1Hypothetical protein. (338 aa)
SFQ52452.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (407 aa)
SFQ52610.1Site-specific DNA recombinase. (236 aa)
SFQ52880.1ATP-dependent DNA helicase RecQ. (908 aa)
SFQ53792.1ATP-dependent DNA helicase RecQ. (645 aa)
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa)
SFQ58451.1Hypothetical protein. (219 aa)
SFQ60505.1REP element-mobilizing transposase RayT. (185 aa)
SFQ64788.1Hypothetical protein. (225 aa)
SFQ66348.1Hypothetical protein. (181 aa)
SFQ78763.1Protein of unknown function. (368 aa)
SFQ78889.1Transposase. (511 aa)
SFQ79478.1Recombinase. (227 aa)
SFQ79487.1Site-specific DNA recombinase. (234 aa)
SFQ79565.1Transposase. (170 aa)
SFQ79615.1Transposase. (45 aa)
SFQ79681.1Transposase. (100 aa)
SFQ79711.1Helix-turn-helix domain-containing protein. (169 aa)
SFQ79756.1Transposase. (123 aa)
SFQ79982.1Hypothetical protein. (473 aa)
SFQ80047.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (326 aa)
SFQ80176.1Transposase. (100 aa)
SFQ80188.1Transposase. (112 aa)
SFQ81291.1Transposase. (243 aa)
SFQ81341.1Transposase. (100 aa)
SFQ81358.1Transposase. (558 aa)
SFQ81450.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (324 aa)
SFQ82087.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (351 aa)
SFQ82091.1Phage integrase family protein. (758 aa)
SFQ82175.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (326 aa)
SFQ82375.1Transposase. (329 aa)
SFQ82394.1Transposase. (100 aa)
SFQ82634.1Transposase. (516 aa)
SFQ83012.1Transposase; Manually curated. (251 aa)
SFQ83016.1Site-specific DNA recombinase. (222 aa)
SFQ83361.1Site-specific DNA recombinase. (204 aa)
SFQ83572.1Phage integrase, N-terminal SAM-like domain; Partial gene; manually curated; Belongs to the 'phage' integrase family. (183 aa)
SFQ83779.1Transcriptional regulator, LacI family. (393 aa)
SFQ01449.1Putative ATPase. (442 aa)
recRDNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (204 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (352 aa)
recARecombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (371 aa)
xerC-2Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (292 aa)
SFQ23933.1Lamin Tail Domain. (856 aa)
Your Current Organism:
Siccationidurans arizonensis
NCBI taxonomy Id: 1227077
Other names: DSM 17870, Hymenobacter arizonensis, Hymenobacter arizonensis Reddy and Garcia-Pichel 2013, Hymenobacter sp. OR362-8, JCM 13504, S. arizonensis, strain OR362-8
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