STRINGSTRING
polA polA ruvC ruvC SFP72609.1 SFP72609.1 SFP76613.1 SFP76613.1 SFP90733.1 SFP90733.1 SFP91479.1 SFP91479.1 SFP96288.1 SFP96288.1 SFP96315.1 SFP96315.1 SFP96841.1 SFP96841.1 recR recR SFQ18940.1 SFQ18940.1 ruvB ruvB SFQ20135.1 SFQ20135.1 recA recA ruvA ruvA SFQ27559.1 SFQ27559.1 recF recF SFQ29695.1 SFQ29695.1 SFQ29760.1 SFQ29760.1 recG recG SFQ40102.1 SFQ40102.1 SFQ48890.1 SFQ48890.1 SFQ51763.1 SFQ51763.1 recO recO dnaX dnaX SFQ69200.1 SFQ69200.1 SFQ69318.1 SFQ69318.1 SFQ73041.1 SFQ73041.1 priA priA SFQ79750.1 SFQ79750.1 SFQ82431.1 SFQ82431.1 SFQ83115.1 SFQ83115.1 SFQ83311.1 SFQ83311.1 SFQ83367.1 SFQ83367.1 SFQ83675.1 SFQ83675.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polADNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (963 aa)
ruvCHolliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (213 aa)
SFP72609.1UvrD-like helicase C-terminal domain-containing protein. (476 aa)
SFP76613.1DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (374 aa)
SFP90733.1DNA polymerase III, delta subunit. (395 aa)
SFP91479.1DNA polymerase-3 subunit epsilon. (494 aa)
SFP96288.1Protein of unknown function. (140 aa)
SFP96315.1Putative DNA-binding domain-containing protein. (208 aa)
SFP96841.1ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains). (1146 aa)
recRDNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (204 aa)
SFQ18940.1DNA polymerase-3 subunit delta'. (381 aa)
ruvBHolliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (352 aa)
SFQ20135.1Periplasmic chaperone for outer membrane proteins SurA. (527 aa)
recARecombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (371 aa)
ruvAHolliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa)
SFQ27559.1Hypothetical protein. (204 aa)
recFDNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (370 aa)
SFQ29695.1Peptidyl-prolyl cis-trans isomerase D. (708 aa)
SFQ29760.1Exonuclease RecJ. (579 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (698 aa)
SFQ40102.1Single-strand binding protein. (144 aa)
SFQ48890.1Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains. (301 aa)
SFQ51763.1DNA polymerase-3 subunit epsilon. (240 aa)
recODNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa)
dnaXDNA polymerase-3 subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. (685 aa)
SFQ69200.1DNA polymerase III, alpha subunit. (1237 aa)
SFQ69318.1DNA polymerase (family 10). (578 aa)
SFQ73041.1DNA polymerase-3 subunit epsilon. (203 aa)
priAReplication restart DNA helicase PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (847 aa)
SFQ79750.1Relaxase/Mobilisation nuclease domain-containing protein. (872 aa)
SFQ82431.1AAA domain-containing protein. (1617 aa)
SFQ83115.1Relaxase/Mobilisation nuclease domain-containing protein. (756 aa)
SFQ83311.1Fic family protein. (373 aa)
SFQ83367.1Fic family protein. (372 aa)
SFQ83675.1Hypothetical protein. (67 aa)
Your Current Organism:
Siccationidurans arizonensis
NCBI taxonomy Id: 1227077
Other names: DSM 17870, Hymenobacter arizonensis, Hymenobacter arizonensis Reddy and Garcia-Pichel 2013, Hymenobacter sp. OR362-8, JCM 13504, S. arizonensis, strain OR362-8
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