STRINGSTRING
rpl7ae rpl7ae rps17p rps17p rpl29 rpl29 rps3p rps3p rpl22p rpl22p rps19p rps19p rpl2p rpl2p rpl23 rpl23 rpl4lp rpl4lp rpl3p rpl3p rpl37ae rpl37ae rpl15e rpl15e rpl10e rpl10e rps6e rps6e rps10p rps10p rps7 rps7 rps12P rps12P rps24e rps24e rps27ae rps27ae rpl40e rpl40e hel308 hel308 radA radA C444_00065 C444_00065 endA endA C444_20521 C444_20521 rpl39e rpl39e rpl31e rpl31e rplX rplX rps19e rps19e rps27e rps27e rpl44e rpl44e rps17E rps17E rps13p rps13p rps4p rps4p rps11p rps11p rpl18e rpl18e rpl13p rpl13p rps9p rps9p rps2P rps2P rps28e rps28e rpl24e rpl24e rpl21e rpl21e rps10 rps10 rpl37e rpl37e rpl11p rpl11p rpl1P rpl1P rpl14p rpl14p rplP0 rplP0 rpl12p rpl12p rps15p rps15p rps3ae rps3ae rps8e rps8e rpl15p rpl15p rpl30p rpl30p rps5p rps5p rpl18p rpl18p rpl19e rpl19e rpl32e rpl32e rpl6p rpl6p rps8p rps8p rps14 rps14 rpl5p rpl5p rps4e rps4e rpl24p rpl24p
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpl7ae50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (120 aa)
rps17p30S ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (112 aa)
rpl29COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (71 aa)
rps3p30S ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (310 aa)
rpl22p50S ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (155 aa)
rps19p30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (140 aa)
rpl2p50S ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (240 aa)
rpl2350S ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (85 aa)
rpl4lp50S ribosomal protein L4P; Forms part of the polypeptide exit tunnel. (246 aa)
rpl3p50S ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (338 aa)
rpl37ae50S ribosomal protein L37Ae; Binds to the 23S rRNA. (102 aa)
rpl15eCOG1632 Ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (196 aa)
rpl10eCOG0197 Ribosomal protein L16/L10E; Belongs to the universal ribosomal protein uL16 family. (177 aa)
rps6eCOG2125 Ribosomal protein S6E (S10); Belongs to the eukaryotic ribosomal protein eS6 family. (129 aa)
rps10p30S ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rps730S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (206 aa)
rps12P30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rps24eCOG2004 Ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family. (102 aa)
rps27aeCOG1998 Ribosomal protein S27AE; Belongs to the eukaryotic ribosomal protein eS31 family. (44 aa)
rpl40eCOG1552 Ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
hel308Ski2-like helicase; DNA-dependent ATPase and 3'-5' DNA helicase that may be involved in repair of stalled replication forks. (800 aa)
radADNA repair and recombination protein RadA; Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules. (349 aa)
C444_00065Pre-mRNA splicing helicase; COG1204 Superfamily II helicase. (789 aa)
endAtRNA splicing endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5' and 3' splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp. (336 aa)
C444_20521COG1383 Ribosomal protein S17E. (65 aa)
rpl39eCOG2167 Ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family. (50 aa)
rpl31eCOG2097 Ribosomal protein L31E; Belongs to the ribosomal protein L31e family. (92 aa)
rplXCOG2157 Ribosomal protein L20A (L18A). (57 aa)
rps19e30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (153 aa)
rps27eCOG2051 Ribosomal protein S27E. (57 aa)
rpl44e50S ribosomal protein L44e; Binds to the 23S rRNA. (92 aa)
rps17ECOG1383 Ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa)
rps13p30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (177 aa)
rps4p30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (171 aa)
rps11p30S ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (129 aa)
rpl18eCOG1727 Ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. (116 aa)
rpl13p50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (145 aa)
rps9pCOG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (132 aa)
rps2PCOG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (272 aa)
rps28eCOG2053 Ribosomal protein S28E/S33; Belongs to the eukaryotic ribosomal protein eS28 family. (75 aa)
rpl24e50S ribosomal protein L24e/unknown domain fusion protein; Binds to the 23S rRNA. (110 aa)
rpl21eCOG2139 Ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (96 aa)
rps1030S ribosomal protein S10p; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (110 aa)
rpl37e50S ribosomal protein L37e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (57 aa)
rpl11p50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (162 aa)
rpl1P50S ribosomal protein L1P; Binds directly to 23S rRNA. Probably involved in E site tRNA release. (212 aa)
rpl14p50S ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (132 aa)
rplP0Acidic ribosomal protein P0; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (348 aa)
rpl12p50S ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps15pCOG0184 Ribosomal protein S15P/S13E. (156 aa)
rps3aeCOG1890 Ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (213 aa)
rps8eCOG2007 Ribosomal protein S8E. (123 aa)
rpl15p50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (165 aa)
rpl30pCOG1841 Ribosomal protein L30/L7E. (154 aa)
rps5p30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (212 aa)
rpl18p50S ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (139 aa)
rpl19e50S ribosomal protein L19e; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (149 aa)
rpl32e50S ribosomal protein L32e; COG0468 RecA/RadA recombinase; Belongs to the eukaryotic ribosomal protein eL32 family. (241 aa)
rpl6p50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
rps8p30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rps1430S ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles. (61 aa)
rpl5p50S ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (177 aa)
rps4eCOG1471 Ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family. (234 aa)
rpl24p50S ribosomal protein L24P; Located at the polypeptide exit tunnel on the outside of the subunit. (120 aa)
Your Current Organism:
Haloarcula japonica
NCBI taxonomy Id: 1227453
Other names: H. japonica DSM 6131, Haloarcula japonica DSM 6131
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