12 items (Natronorubrum bangense) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C494_00010	HTTM domain-containing protein. (522 aa)
	C494_03730	COG1300 Uncharacterized membrane protein. (509 aa)
	C494_03735	Hypothetical protein. (92 aa)
	C494_03740	COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (153 aa)
	C494_03745	Sodium symporter protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (551 aa)
	C494_03750	Solute symporter protein; COG4327 Predicted membrane protein. (141 aa)
	C494_03860	Hypothetical protein. (529 aa)
	C494_03865	Hypothetical protein. (336 aa)
	C494_15728	COG4421 Capsular polysaccharide biosynthesis protein. (389 aa)
	C494_15733	Type I phosphodiesterase/nucleotide pyrophosphatase. (531 aa)
	C494_16423	COG3677 Transposase and inactivated derivatives. (293 aa)
	C494_16428	Hypothetical protein. (811 aa)

Your Current Organism:

Natronorubrum bangense

NCBI taxonomy Id: 1227500
Other names: N. bangense JCM 10635, Natronorubrum bangense JCM 10635

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C494_00010	C494_03730	HTTM domain-containing protein.	COG1300 Uncharacterized membrane protein.	0.573
C494_00010	C494_16423	HTTM domain-containing protein.	COG3677 Transposase and inactivated derivatives.	0.511
C494_03730	C494_00010	COG1300 Uncharacterized membrane protein.	HTTM domain-containing protein.	0.573
C494_03730	C494_03735	COG1300 Uncharacterized membrane protein.	Hypothetical protein.	0.694
C494_03730	C494_03740	COG1300 Uncharacterized membrane protein.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.452
C494_03730	C494_03860	COG1300 Uncharacterized membrane protein.	Hypothetical protein.	0.579
C494_03730	C494_16423	COG1300 Uncharacterized membrane protein.	COG3677 Transposase and inactivated derivatives.	0.401
C494_03735	C494_03730	Hypothetical protein.	COG1300 Uncharacterized membrane protein.	0.694
C494_03740	C494_03730	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	COG1300 Uncharacterized membrane protein.	0.452
C494_03740	C494_03745	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	Sodium symporter protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.791
C494_03740	C494_03750	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	Solute symporter protein; COG4327 Predicted membrane protein.	0.787
C494_03745	C494_03740	Sodium symporter protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.791
C494_03745	C494_03750	Sodium symporter protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	Solute symporter protein; COG4327 Predicted membrane protein.	0.794
C494_03750	C494_03740	Solute symporter protein; COG4327 Predicted membrane protein.	COG0589 Universal stress protein UspA and related nucleotide-binding proteins.	0.787
C494_03750	C494_03745	Solute symporter protein; COG4327 Predicted membrane protein.	Sodium symporter protein; COG4147 Predicted symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.794
C494_03860	C494_03730	Hypothetical protein.	COG1300 Uncharacterized membrane protein.	0.579
C494_03860	C494_03865	Hypothetical protein.	Hypothetical protein.	0.495
C494_03865	C494_03860	Hypothetical protein.	Hypothetical protein.	0.495
C494_15728	C494_15733	COG4421 Capsular polysaccharide biosynthesis protein.	Type I phosphodiesterase/nucleotide pyrophosphatase.	0.491
C494_15733	C494_15728	Type I phosphodiesterase/nucleotide pyrophosphatase.	COG4421 Capsular polysaccharide biosynthesis protein.	0.491