STRINGSTRING
C494_02226 C494_02226 C494_04795 C494_04795 C494_05150 C494_05150 uvrB uvrB C494_06205 C494_06205 C494_06260 C494_06260 C494_06550 C494_06550 C494_06865 C494_06865 C494_07350 C494_07350 C494_08582 C494_08582 C494_08712 C494_08712 C494_09745 C494_09745 C494_14798 C494_14798 C494_15523 C494_15523 rad25 rad25
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C494_02226COG1201 Lhr-like helicases. (940 aa)
C494_04795DEAD/DEAH box helicase; COG1202 Superfamily II helicase, archaea-specific. (688 aa)
C494_05150DEAD/DEAH box helicase; COG1199 Rad3-related DNA helicases. (723 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (684 aa)
C494_06205COG1204 Superfamily II helicase. (686 aa)
C494_06260Hef nuclease; COG1111 ERCC4-like helicases. (810 aa)
C494_06550DEAD/DEAH box helicase domain-containing protein; COG1204 Superfamily II helicase. (787 aa)
C494_06865Type III restriction enzyme, res subunit; COG1061 DNA or RNA helicases of superfamily II. (657 aa)
C494_07350Type III restriction protein res subunit; COG1061 DNA or RNA helicases of superfamily II. (481 aa)
C494_08582COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster. (812 aa)
C494_08712Helicase; COG0553 Superfamily II DNA/RNA helicases, SNF2 family. (585 aa)
C494_09745Helicase c2; COG1199 Rad3-related DNA helicases. (605 aa)
C494_14798Hypothetical protein; COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster. (908 aa)
C494_15523DEAD/H associated domain protein; COG1201 Lhr-like helicases. (943 aa)
rad25Type III restriction protein res subunit; COG1061 DNA or RNA helicases of superfamily II. (659 aa)
Your Current Organism:
Natronorubrum bangense
NCBI taxonomy Id: 1227500
Other names: N. bangense JCM 10635, Natronorubrum bangense JCM 10635
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