(5 nodes) 3-beta hydroxysteroid dehydrogenase/isomerase family, and YbhB/YbcL network (Paraburkholderia phenoliruptrix)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFT86094.1	Putative UDP-glucose 4-epimerase; Identified by sequence similarity; putative. (266 aa)
	AFT87402.1	PEBP family protein; Identified by sequence similarity; putative. (200 aa)
	AFT89594.1	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative. (280 aa)
	AFT89583.1	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative. (276 aa)
	AFT89064.1	Polyketide cyclase/dehydrase; Identified by sequence similarity; putative. (181 aa)

Your Current Organism:

Paraburkholderia phenoliruptrix

NCBI taxonomy Id: 1229205
Other names: Burkholderia phenoliruptrix BR3459a, P. phenoliruptrix BR3459a, Paraburkholderia phenoliruptrix BR3459a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFT86094.1	AFT89583.1	BUPH_02525	BUPH_06170	Putative UDP-glucose 4-epimerase; Identified by sequence similarity; putative.	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	0.922
AFT86094.1	AFT89594.1	BUPH_02525	BUPH_06159	Putative UDP-glucose 4-epimerase; Identified by sequence similarity; putative.	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	0.920
AFT89583.1	AFT86094.1	BUPH_06170	BUPH_02525	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	Putative UDP-glucose 4-epimerase; Identified by sequence similarity; putative.	0.922
AFT89583.1	AFT89594.1	BUPH_06170	BUPH_06159	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	0.910
AFT89594.1	AFT86094.1	BUPH_06159	BUPH_02525	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	Putative UDP-glucose 4-epimerase; Identified by sequence similarity; putative.	0.920
AFT89594.1	AFT89583.1	BUPH_06159	BUPH_06170	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	NAD-dependent epimerase/dehydratase; Identified by sequence similarity; putative.	0.910