(5 nodes) ABC-type amino acid transporter activity, and Ligand-gated channel activity network (gamma proteobacterium L18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	yadH	Inner membrane transport permease YadH. (259 aa)
	tcyC_1	L-cystine import ATP-binding protein TcyC. (500 aa)
	fliY_1	L-cystine-binding protein FliY. (280 aa)
	opuAB_4	Glycine betaine transport system permease protein OpuAB. (283 aa)
	glnQ_9	Glutamine transport ATP-binding protein GlnQ. (513 aa)

Your Current Organism:

gamma proteobacterium L18

NCBI taxonomy Id: 1229486
Other names: g. proteobacterium L18

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
fliY_1	glnQ_9	GCA_000497835_01180	GCA_000497835_05924	L-cystine-binding protein FliY.	Glutamine transport ATP-binding protein GlnQ.	0.998
fliY_1	opuAB_4	GCA_000497835_01180	GCA_000497835_05702	L-cystine-binding protein FliY.	Glycine betaine transport system permease protein OpuAB.	0.999
fliY_1	tcyC_1	GCA_000497835_01180	GCA_000497835_01179	L-cystine-binding protein FliY.	L-cystine import ATP-binding protein TcyC.	0.999
fliY_1	yadH	GCA_000497835_01180	GCA_000497835_00812	L-cystine-binding protein FliY.	Inner membrane transport permease YadH.	0.939
glnQ_9	fliY_1	GCA_000497835_05924	GCA_000497835_01180	Glutamine transport ATP-binding protein GlnQ.	L-cystine-binding protein FliY.	0.998
glnQ_9	opuAB_4	GCA_000497835_05924	GCA_000497835_05702	Glutamine transport ATP-binding protein GlnQ.	Glycine betaine transport system permease protein OpuAB.	0.999
glnQ_9	tcyC_1	GCA_000497835_05924	GCA_000497835_01179	Glutamine transport ATP-binding protein GlnQ.	L-cystine import ATP-binding protein TcyC.	0.994
glnQ_9	yadH	GCA_000497835_05924	GCA_000497835_00812	Glutamine transport ATP-binding protein GlnQ.	Inner membrane transport permease YadH.	0.939
opuAB_4	fliY_1	GCA_000497835_05702	GCA_000497835_01180	Glycine betaine transport system permease protein OpuAB.	L-cystine-binding protein FliY.	0.999
opuAB_4	glnQ_9	GCA_000497835_05702	GCA_000497835_05924	Glycine betaine transport system permease protein OpuAB.	Glutamine transport ATP-binding protein GlnQ.	0.999
opuAB_4	tcyC_1	GCA_000497835_05702	GCA_000497835_01179	Glycine betaine transport system permease protein OpuAB.	L-cystine import ATP-binding protein TcyC.	0.999
opuAB_4	yadH	GCA_000497835_05702	GCA_000497835_00812	Glycine betaine transport system permease protein OpuAB.	Inner membrane transport permease YadH.	0.999
tcyC_1	fliY_1	GCA_000497835_01179	GCA_000497835_01180	L-cystine import ATP-binding protein TcyC.	L-cystine-binding protein FliY.	0.999
tcyC_1	glnQ_9	GCA_000497835_01179	GCA_000497835_05924	L-cystine import ATP-binding protein TcyC.	Glutamine transport ATP-binding protein GlnQ.	0.994
tcyC_1	opuAB_4	GCA_000497835_01179	GCA_000497835_05702	L-cystine import ATP-binding protein TcyC.	Glycine betaine transport system permease protein OpuAB.	0.999
tcyC_1	yadH	GCA_000497835_01179	GCA_000497835_00812	L-cystine import ATP-binding protein TcyC.	Inner membrane transport permease YadH.	0.939
yadH	fliY_1	GCA_000497835_00812	GCA_000497835_01180	Inner membrane transport permease YadH.	L-cystine-binding protein FliY.	0.939
yadH	glnQ_9	GCA_000497835_00812	GCA_000497835_05924	Inner membrane transport permease YadH.	Glutamine transport ATP-binding protein GlnQ.	0.939
yadH	opuAB_4	GCA_000497835_00812	GCA_000497835_05702	Inner membrane transport permease YadH.	Glycine betaine transport system permease protein OpuAB.	0.999
yadH	tcyC_1	GCA_000497835_00812	GCA_000497835_01179	Inner membrane transport permease YadH.	L-cystine import ATP-binding protein TcyC.	0.939