(6 nodes) Bacterial extracellular solute-binding protein, and TOBE domain network (gamma proteobacterium L18)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fbpC2_1	Fe(3+) ions import ATP-binding protein FbpC 2. (347 aa)
	cysW_2	Sulfate transport system permease protein CysW. (532 aa)
	GCA_000497835_03648	Putative binding protein component of ABC iron transporter. (333 aa)
	fbpC	Fe(3+) ions import ATP-binding protein FbpC. (344 aa)
	phnV_2	Putative 2-aminoethylphosphonate transport system permease protein PhnV. (475 aa)
	fbpA	Fe(3+)-binding periplasmic protein. (335 aa)

Your Current Organism:

gamma proteobacterium L18

NCBI taxonomy Id: 1229486
Other names: g. proteobacterium L18

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GCA_000497835_03648	cysW_2	GCA_000497835_03648	GCA_000497835_03647	Putative binding protein component of ABC iron transporter.	Sulfate transport system permease protein CysW.	0.990
GCA_000497835_03648	fbpC	GCA_000497835_03648	GCA_000497835_05418	Putative binding protein component of ABC iron transporter.	Fe(3+) ions import ATP-binding protein FbpC.	0.762
GCA_000497835_03648	fbpC2_1	GCA_000497835_03648	GCA_000497835_02255	Putative binding protein component of ABC iron transporter.	Fe(3+) ions import ATP-binding protein FbpC 2.	0.906
GCA_000497835_03648	phnV_2	GCA_000497835_03648	GCA_000497835_05419	Putative binding protein component of ABC iron transporter.	Putative 2-aminoethylphosphonate transport system permease protein PhnV.	0.949
cysW_2	GCA_000497835_03648	GCA_000497835_03647	GCA_000497835_03648	Sulfate transport system permease protein CysW.	Putative binding protein component of ABC iron transporter.	0.990
cysW_2	fbpA	GCA_000497835_03647	GCA_000497835_05420	Sulfate transport system permease protein CysW.	Fe(3+)-binding periplasmic protein.	0.953
cysW_2	fbpC	GCA_000497835_03647	GCA_000497835_05418	Sulfate transport system permease protein CysW.	Fe(3+) ions import ATP-binding protein FbpC.	0.890
cysW_2	fbpC2_1	GCA_000497835_03647	GCA_000497835_02255	Sulfate transport system permease protein CysW.	Fe(3+) ions import ATP-binding protein FbpC 2.	0.963
fbpA	cysW_2	GCA_000497835_05420	GCA_000497835_03647	Fe(3+)-binding periplasmic protein.	Sulfate transport system permease protein CysW.	0.953
fbpA	fbpC	GCA_000497835_05420	GCA_000497835_05418	Fe(3+)-binding periplasmic protein.	Fe(3+) ions import ATP-binding protein FbpC.	0.935
fbpA	fbpC2_1	GCA_000497835_05420	GCA_000497835_02255	Fe(3+)-binding periplasmic protein.	Fe(3+) ions import ATP-binding protein FbpC 2.	0.814
fbpA	phnV_2	GCA_000497835_05420	GCA_000497835_05419	Fe(3+)-binding periplasmic protein.	Putative 2-aminoethylphosphonate transport system permease protein PhnV.	0.986
fbpC	GCA_000497835_03648	GCA_000497835_05418	GCA_000497835_03648	Fe(3+) ions import ATP-binding protein FbpC.	Putative binding protein component of ABC iron transporter.	0.762
fbpC	cysW_2	GCA_000497835_05418	GCA_000497835_03647	Fe(3+) ions import ATP-binding protein FbpC.	Sulfate transport system permease protein CysW.	0.890
fbpC	fbpA	GCA_000497835_05418	GCA_000497835_05420	Fe(3+) ions import ATP-binding protein FbpC.	Fe(3+)-binding periplasmic protein.	0.935
fbpC	fbpC2_1	GCA_000497835_05418	GCA_000497835_02255	Fe(3+) ions import ATP-binding protein FbpC.	Fe(3+) ions import ATP-binding protein FbpC 2.	0.839
fbpC	phnV_2	GCA_000497835_05418	GCA_000497835_05419	Fe(3+) ions import ATP-binding protein FbpC.	Putative 2-aminoethylphosphonate transport system permease protein PhnV.	0.980
fbpC2_1	GCA_000497835_03648	GCA_000497835_02255	GCA_000497835_03648	Fe(3+) ions import ATP-binding protein FbpC 2.	Putative binding protein component of ABC iron transporter.	0.906
fbpC2_1	cysW_2	GCA_000497835_02255	GCA_000497835_03647	Fe(3+) ions import ATP-binding protein FbpC 2.	Sulfate transport system permease protein CysW.	0.963
fbpC2_1	fbpA	GCA_000497835_02255	GCA_000497835_05420	Fe(3+) ions import ATP-binding protein FbpC 2.	Fe(3+)-binding periplasmic protein.	0.814